Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2732095 242 3e-59 >seq2732095 Length=3591 Score = 242 bits (268), Expect = 3e-59 Identities = 532/786 (68%), Gaps = 12/786 (2%) Strand=Plus/Minus Query 12802 TTAAAAATCAATATCTAGAGAAAATACATCATCGTCCTTATTTGACATAACAG-ACATTT 12860 |||||||||| ||| |||| || | | ||| | |||||||||| |||||| Sbjct 1830 TTAAAAATCAGCATCCAGAGTGAAGCTACGCTGGTCTGTGCTTGACATAACTCCACATTT 1771 Query 12861 TTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTT 12920 || | || |||| ||||| |||||||| ||||| ||||| || || | || || |||| Sbjct 1770 TTGG-TACTCGCCTACTCTCTTTTCAAAGAAGTTGGTTTTACCCTCAAGAGATATGTTTT 1712 Query 12921 CCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAACA 12980 |||| || || || ||||| | | | || || | ||| |||| || | | | Sbjct 1711 CCATGAAGTCAAATGGATTCTCTGCATTGTAAAGCTTATCACAGCCTAGCTCCACAAGAA 1652 Query 12981 ATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATT 13040 | || |||||||| || ||||| || |||| | | |||||||||| || || | | Sbjct 1651 GACGATCTGCAACAAATTCAATGTATTGCCTCATAAGAACACAGTTCATACCAATGAGAT 1592 Query 13041 TTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT-G 13099 | ||||||| ||| || ||||| || | || ||| || | || || || || || | Sbjct 1591 TGACAGGCAGAGCATCAGTTAAGAATTCTTGTTCAATTTTGACGGCATCATCAATGATAG 1532 Query 13100 TCTCTTATTAC-GTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAA 13158 || | | ||| ||| || ||| | |||||| ||||| | ||| ||||| Sbjct 1531 ACTGAACATGCTGTTGACTA--GGCTTGTTTACCAAATGCTTGAACATGAGACAGGCAAA 1474 Query 13159 ATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCAT 13218 ||| ||| | |||||||| || |||| || || ||| || ||||| ||||| Sbjct 1473 GTCAGTGTGAAGACCTTCATCCCTGGAGATTAATTCATTGCTAAAGGTAAGACCAGGCAT 1414 Query 13219 AAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCC--GaaaaaaaTATTCCT 13276 || || ||||| || | |||||| || |||||||| ||||| ||| |||||| ||| Sbjct 1413 CAGGCCACGTTTCTTGAGCCAAAAGATCGCAGCAAAGGAACCGCTGAAGAAAATA--CCT 1356 Query 13277 TCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTACTCTCTATCCAC 13336 || || || ||||| || || | | |||| |||| || | ||| | | ||||| Sbjct 1355 TCCACAGCAGCAAAGGCAATGATACGTTCAGCATAACTAGCAGTTTCATGGGCAATCCA- 1297 Query 13337 TTTCTG-GCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAA 13395 | || | ||||||| || || | ||| || || || | || | || || || | Sbjct 1296 TCTCAGAGCCCAGTCAGCCTTCTTTTTGACACAAGGCAAGGTCTCAACGGCATTGAACAG 1237 Query 13396 ATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGA 13455 ||||| ||| | | |||| || || || | || | ||| || |||||||| Sbjct 1236 TCTATTTTGTTCTTCAGAGTCTCTGATGTAGGTGTTGATGAGTAAACTGTACATTTCACT 1177 Query 13456 ATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAAC 13515 || ||||||||||| || ||||||||||||||||| ||||| || |||| || ||||| Sbjct 1176 GTGGATATTTTCCATTGCAATTTGGAAACCATAAAAGCATCTTGCTTCTGGAACTTGAAC 1117 Query 13516 TTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaa 13575 ||| | | ||||| || | | ||||| ||||| ||||| ||| |||||| ||||| Sbjct 1116 TTCTTGGCAGAATCTCTCGACAAGATTTTCATTAACAATCCCATCAGAAGCAGCGAAAAA 1057 Query 13576 aGCAAG 13581 || || Sbjct 1056 TGCCAG 1051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 416534015650224