Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2732657 194 4e-44 seq2442759 176 1e-38 seq2750648 170 4e-37 seq642385 127 5e-24 seq1400646 111 3e-19 seq2412204 109 1e-18 seq2408123 105 1e-17 seq2732095 91.5 3e-13 >seq2732657 Length=3626 Score = 194 bits (214), Expect = 4e-44 Identities = 181/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| |||||||| |||| ||| | ||||||||| ||||||||||| |||||| Sbjct 2232 ATACCACCTCTAAGCCTAAGAACTAAATGGAGTGTAGATTCCTTCTGAATATTGTAGTCA 2291 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | ||| ||||| || || || || ||||| || |||||||| || || ||| Sbjct 2292 GACAGAGTGCGACCATCTTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGA 2351 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || ||||||||||| |||||||| || | ||| || ||| || Sbjct 2352 GGGATACCTTCCTTGTCTTGAATCTTTGCCTTTACATTCTCAATGGTGTCTGAAGGCTCC 2411 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| ||||| || || || ||||| || || ||||| || ||||| Sbjct 2412 ACTTCTAGGGTAATTGTTTTTCCTGTAAGGGTCTTCACAAAAATTTGCAT 2461 Score = 181 bits (200), Expect = 2e-40 Identities = 178/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| ||||| || || | ||| | ||||||||| ||||||||||| |||||| Sbjct 2004 ATACCGCCTCTAAGCCTGAGAACCAAATGGAGTGTAGATTCCTTCTGAATATTGTAGTCA 2063 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | ||| | ||| ||||| | || || |||||||| || | ||||| || || || Sbjct 2064 GACAAAGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGGTCTGGG 2123 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| || ||||| ||||| |||||||| | |||||| |||||| Sbjct 2124 GGGATACCTTCCTTATCTTGGATCTTGGCTTTGACATTTTCAATGGTATCAGATGGTTCT 2183 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||| || ||||| ||||||||||| || || || |||||||| Sbjct 2184 ACTTCCAATGTGATGGTCTTTCCAGTAAGTGTCTTCACGAAGATCTGCAT 2233 Score = 176 bits (194), Expect = 1e-38 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| ||||| ||||||| ||| | || || || ||||| ||||| || ||| Sbjct 2460 ATACCACCTCTGAGCCTGAGTACTAAATGGAGCGTGGACTCCTTCTGGATATTGTAATCA 2519 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | ||| ||||| || || || ||||||||||| | |||||||||||||||| Sbjct 2520 GACAATGTACGACCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGTTGATCAGGA 2579 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| || ||||| | ||| |||||||| | ||||| || || Sbjct 2580 GGGATGCCTTCCTTATCTTGGATCTTAGTTTTAACATTTTCAATAGTATCAGATGGCTCA 2639 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| ||||| || || || || || || ||||| ||||| |||||||| Sbjct 2640 ACCTCAAGTGTTATGGTTTTTCCTGTGAGGGTTTTCACAAAGATCTGCAT 2689 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || ||||| | || | |||||||| ||||||||||| ||||| Sbjct 2688 ATACCACCTCTCAATCTTAGTACCAAGTGAAGAGTAGATTCCTTCTGAATATTGTAGTCT 2747 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | || ||||| || ||||| |||||||| || |||||||| || || ||| Sbjct 2748 GACAATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGA 2807 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| || ||||| ||||| |||||||| | ||| || |||||| Sbjct 2808 GGAATACCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGTTCT 2867 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || || ||||| ||||| || ||||| |||||||||||||| Sbjct 2868 ACTTCCAAGGTGATGGTCTTTCCAGTGAGGGTTTTAACAAATATCTGCAT 2917 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | | ||||| || || | |||||||| |||||||| || || ||| Sbjct 3372 ATACCACCTCTCAATCGGAGTACAAGGTGAAGAGTAGATTCCTTCTGAATGTTGTAATCA 3431 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | ||| ||||| | || ||||||||||| || | ||||||||| || ||| Sbjct 3432 GACAATGTACGACCATCTTCCAACTGCTTTCCAGCAAAGATCAACCTCTGTTGGTCTGGA 3491 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| || ||||| ||||| |||||||| | |||||| |||||| Sbjct 3492 GGAATACCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCAATGGTATCTGATGGTTCT 3551 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| || || ||||| || || || |||||||| Sbjct 3552 ACCTCAAGGGTTATGGTCTTTCCTGTGAGTGTCTTGACGAAGATCTGCAT 3601 Score = 163 bits (180), Expect = 6e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | | ||| || | ||| | ||| ||||||||||| || || || ||| Sbjct 3144 ATACCACCTCTCAATCGAAGCACCAAATGAAGTGTGGATTCTTTCTGGATGTTGTAATCA 3203 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | ||| ||||| | || || ||||||||||| | ||||||||| || || Sbjct 3204 GACAAGGTACGACCATCTTCCAACTGCTTGCCAGCAAAAATCAACCTCTGTTGGTCTGGT 3263 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||||||||||||||| || ||||| || | |||||| |||||| Sbjct 3264 GGAATGCCTTCCTTATCCTGAATCTTTGCCTTCACATTCTCAATGGTATCAGAAGGTTCG 3323 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | ||| || ||||| || || || ||||| ||||| || ||||| Sbjct 3324 ACTTCCAATGTGATGGTCTTTCCTGTGAGGGTTTTGACAAAAATTTGCAT 3373 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 104342 AGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTA 104401 || ||||| || | ||| | |||||||| |||||||| || || || || | || | Sbjct 1788 AGTCTAAGGACCAAATGAAGGGTAGATTCCTTCTGAATGTTGTAATCTGACAATGTACGC 1847 Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| || || || || ||||| || || ||||| ||||| || || || || || Sbjct 1848 CCATCTTCCAGCTGCTTGCCTGCAAAGATCAGTCTCTGCTGATCTGGTGGAATGCCCTCC 1907 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 || ||||| |||||||||||||||||||| | || || ||||| || || | || Sbjct 1908 TTGTCCTGGATCTTTGCTTTTACATTTTCAATTGTGTCAGAGGGTTCAACTTCCAAAGTG 1967 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| ||||| || || || || || |||||||| Sbjct 1968 ATGGTCTTTCCAGTGAGGGTCTTCACGAAGATCTGCAT 2005 >seq2442759 Length=1285 Score = 176 bits (194), Expect = 1e-38 Identities = 180/235 (77%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| ||||| || | ||| | ||||||||| ||||| || || || || Sbjct 84 ATACCACCTCTTAATCTAAGGACCAAATGAAGTGTAGATTCCTTCTGGATGTTGTAATCT 143 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | || ||||| || || ||||||||||| || | |||||| || || || Sbjct 144 GACAATGTGCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCGGGT 203 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || ||||| || |||||||| ||||||||||| | ||| || ||| ||| Sbjct 204 GGAATGCCCTCCTTATCTTGGATCTTTGCCTTTACATTTTCGATGGTGTCTGAAGGCTCT 263 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTGT 104564 ||||| || ||||| ||||| ||||| ||||| || ||||| |||||||| |||| Sbjct 264 ACCTCAAGGGTAATGGTCTTCCCAGTGAGTGTCTTCACAAAGATCTGCATGTTGT 318 >seq2750648 Length=12224 Score = 170 bits (188), Expect = 4e-37 Identities = 177/232 (76%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 104329 TATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTC 104388 ||| |||||||| || || | || | ||| | |||||||||||| ||||| ||||| || Sbjct 11053 TATCCCCCCTCTAAGTCTCAAAACCAAATGAATTGTAGATTCTTTTTGAATGTTATAATC 10994 Query 104389 AGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGG 104448 || | | | || ||||||| |||||| || || ||||||| | ||||||||| || Sbjct 10993 AGTAATACATTTATTATCTTCTAATTGTTTACCGGCGAAAATTAATCGCTGTTGATCGGG 10934 Query 104449 AGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508 ||| || |||||||| || || || ||| ||| | ||||||| || || | | ||| Sbjct 10933 AGGAATACCTTCTTTGTCTTGTATTTTTTGTTTAAGTTTTTCTATTGTCTCTCCCGATTC 10874 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||| |||| ||||| ||||||||||| ||||||||||| ||||| |||||| Sbjct 10873 TACTTCTATAGTAATTGTCTTACCAGTGAGTGTTTTTACGAATATTTGCATT 10822 >seq642385 Length=370 Score = 127 bits (140), Expect = 5e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| ||||| || | ||| | ||||||||| ||||| || || ||||| Sbjct 37 ATACCACCTCTTAATCTAAGGACCAAATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCT 96 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | || | || ||||| || || ||||||||||| || | ||||||||| || || Sbjct 97 GACAATGTGCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGTTGGTCTGGG 156 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||| || ||||| || || ||| |||| | | || || ||| Sbjct 157 GGGATCCCTTCCTTATCTTGGATCTTGGCCTTCACAATTTCAATTGAGTCTGATGGATCT 216 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 | || |||| ||||| || || ||||| || || || |||||||| Sbjct 217 CGTACAAGCGTAAGGGTCTTTCCTGTTAGTGTCTTGACGAAGATCTGCAT 266 >seq1400646 Length=492 Score = 111 bits (122), Expect = 3e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 104405 TCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTA 104464 ||||||| |||||| || || ||||||| | ||||||||| ||||| || ||| |||| Sbjct 10 TCTTCTAATTGTTTACCGGCGAAAATTAATCGCTGTTGATCGGGAGGAATACCTACTTTG 69 Query 104465 TCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATA 104524 || || || | | ||| | ||||||| | | | | |||||| |||| |||| Sbjct 70 TCTTGTATTTGTTGTTTAAGTTTTTCTATTTTCTTTCCCGCTTCTACTTCTATATTAATT 129 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||||||||||| ||||||||||| ||||| |||||| Sbjct 130 GTCTTACCAGTGAGTGTTTTTACGAATATTTGCATT 165 >seq2412204 Length=1224 Score = 109 bits (120), Expect = 1e-18 Identities = 89/108 (82%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 |||||||| ||||||||||| || ||||||||||| | ||||| || || |||||| Sbjct 506 CCTTCTTTGTCCTGAATCTTAGCCTTTACATTTTCAATAGTATCCGATGGCTCGACCTCT 447 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || ||||| |||||||||||||| ||||| ||||||||| || Sbjct 446 AGAGTGATGGTCTTGCCAGTAAGTGTTTTCACAAAGATCTGCATTGTG 399 >seq2408123 Length=1217 Score = 105 bits (116), Expect = 1e-17 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 104456 CCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCT 104515 |||||||| ||||||||||| || ||||||||||| | ||||| || || |||||| Sbjct 712 CCTTCTTTGTCCTGAATCTTAGCCTTTACATTTTCAATAGTATCAGATGGCTCGACCTCT 771 Query 104516 AGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 || || || ||||| |||||||| ||||| ||||| ||||||||| || Sbjct 772 AGAGTGATGGTCTTGCCAGTAAGCGTTTTCACAAAGATCTGCATTGTG 819 >seq2732095 Length=3591 Score = 91.5 bits (100), Expect = 3e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 268673 GAACCGCTTTTAGTAAATAACCCAGATAGATTTGTGATATTTCCAATACAGCATGGTGAT 268732 ||||| |||||| | | ||||||| ||||||| || || ||||| ||| | ||| Sbjct 47 GAACCTCTTTTAAAAGACAACCCAGCCCGATTTGTCATTTTCCCAATTCAGTTTCAAGAT 106 Query 268733 ATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTG 268792 || | | ||||||||| | || || ||||| ||||||||||| |||||||| |||||| Sbjct 107 ATCTTCAAGATGTACAAGAAAGCTGTAGCTTCATTTTGGACTGTGGAAGAAGTGGATCTG 166 Query 268793 TCT 268795 ||| Sbjct 167 TCT 169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1110819093368096