Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq2732657 98.7 8e-16 >seq2732657 Length=3626 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCC 48577 |||||||| || ||| |||||| || || |||||||||| |||| || | || ||| Sbjct 2481 ACTAAATGGAGCGTGGACTCCTTCTGGATATTGTAATCAGACAATGTACGACCATCTTCC 2540 Query 48578 AGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATA 48637 ||||||||||| | |||| || | ||| ||||| || | | |||||| || Sbjct 2541 AGCTGCTTACCAGCAAAAATCAACCTCTGTTGATCAGGAGGGATGCCTTCCTTATCTTGG 2600 Query 48638 ATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTA 48697 || || || | | | || ||||| | | ||| ||| | |||||||||||| Sbjct 2601 ATCTTAGTTTTAACATTTTCAATAGTATCAGATGGCTCAACCTCAAGTGTTATGGTTTTT 2660 Query 48698 CCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||| ||||||||||| |||||||| Sbjct 2661 CCTGTGAGGGTTTTCACAAAGATCTGCAT 2689 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || | ||| | | ||| |||||||||||| || || || ||||||||||||| Sbjct 3146 ACCACCTCTCAATCGAAGCACCAAATGAAGTGTGGATTCTTTCTGGATGTTGTAATCAGA 3205 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 ||| || | || |||| |||||| || | |||| || | ||| || || || Sbjct 3206 CAAGGTACGACCATCTTCCAACTGCTTGCCAGCAAAAATCAACCTCTGTTGGTCTGGTGG 3265 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | |||||| ||| ||| || ||| | | | | |||||||| | || || Sbjct 3266 AATGCCTTCCTTATCCTGAATCTTTGCCTTCACATTCTCAATGGTATCAGAAGGTTCGAC 3325 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || | ||| ||||| || || ||||| ||||| |||||||| ||||| Sbjct 3326 TTCCAATGTGATGGTCTTTCCTGTGAGGGTTTTGACAAAAATTTGCAT 3373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 407129047342712