Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq2598388 89.7 3e-13 seq924090 89.7 3e-13 seq2556486 87.8 9e-13 seq2549407 87.8 9e-13 seq2457522 87.8 9e-13 seq2447008 86.0 3e-12 seq2258341 86.0 3e-12 seq2063317 86.0 3e-12 seq2058329 86.0 3e-12 seq1380847 86.0 3e-12 seq1313378 86.0 3e-12 seq2504642 84.2 1e-11 seq2419340 82.4 4e-11 seq2291461 82.4 4e-11 seq445506 82.4 4e-11 >seq2598388 Length=1764 Score = 89.7 bits (98), Expect = 3e-13 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 11449 ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCT 11508 ||| || |||||| | | |||||||||| ||||| | ||||||||||||||| |||||| Sbjct 547 ATCCAACTGGCCCGTAAGGGGATCGAACCCTCGACATCCGCGTTATTAGCACGGCGCTCT 488 Query 11509 RACCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||| Sbjct 487 AACCAACTGAGCTAACAGGCC 467 >seq924090 Length=407 Score = 89.7 bits (98), Expect = 3e-13 Identities = 68/80 (85%), Gaps = 1/80 (1%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | | |||||||||| ||||| | ||||||||||||||| |||||| ||||| Sbjct 83 TTGGCCCGTAAGGGGATCGAACCCTCGACATCCGCGTTATTAGCACGGCGCTCTAACCAA 142 Query 11515 CTGAGCTAATGGGCCGTCGA 11534 ||||||||| |||| |||| Sbjct 143 CTGAGCTAACAGGCC-TCGA 161 >seq2556486 Length=1591 Score = 87.8 bits (96), Expect = 9e-13 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 ||| | ||| |||||| | | |||||||||| ||||| | ||||||||||||||| || Sbjct 520 AAACACCAATCTGGCCCGTAAGGGGATCGAACCCTCGACATCCGCGTTATTAGCACGGCG 461 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||| |||| Sbjct 460 CTCTAACCAACTGAGCTAACAGGCC 436 >seq2549407 Length=1567 Score = 87.8 bits (96), Expect = 9e-13 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | | |||||||||| ||||| | ||||||||||||||| |||||| ||||| Sbjct 1062 TTGGCCCGTAAGGGGATCGAACCCTCGACATCCGCGTTATTAGCACGGCGCTCTAACCAA 1121 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 1122 CTGAGCTAACAGGCC 1136 >seq2457522 Length=1316 Score = 87.8 bits (96), Expect = 9e-13 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| | | |||||||||| ||||| | ||||||||||||||| |||||| |||||| Sbjct 1238 TGGCCCGTAAGGGGATCGAACCCTCGACATCCGCGTTATTAGCACGGCGCTCTAACCAAC 1297 Query 11516 TGAGCTAATGGGCCGTC 11532 |||||||| |||| || Sbjct 1298 TGAGCTAACAGGCCCTC 1314 >seq2447008 Length=1293 Score = 86.0 bits (94), Expect = 3e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| | | |||||||||| ||||| | ||||||||||||||| |||||| |||||| Sbjct 487 TGGCCCGTAAGGGGATCGAACCCTCGACATCCGCGTTATTAGCACGGCGCTCTAACCAAC 428 Query 11516 TGAGCTAATGGGCC 11529 |||||||| |||| Sbjct 427 TGAGCTAACAGGCC 414 >seq2258341 Length=983 Score = 86.0 bits (94), Expect = 3e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| | | |||||||||| ||||| | ||||||||||||||| |||||| |||||| Sbjct 910 TGGCCCGTAAGGGGATCGAACCCTCGACATCCGCGTTATTAGCACGGCGCTCTAACCAAC 969 Query 11516 TGAGCTAATGGGCC 11529 |||||||| |||| Sbjct 970 TGAGCTAACAGGCC 983 >seq2063317 Length=780 Score = 86.0 bits (94), Expect = 3e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| | | |||||||||| ||||| | ||||||||||||||| |||||| |||||| Sbjct 74 TGGCCCGTAAGGGGATCGAACCCTCGACATCCGCGTTATTAGCACGGCGCTCTAACCAAC 15 Query 11516 TGAGCTAATGGGCC 11529 |||||||| |||| Sbjct 14 TGAGCTAACAGGCC 1 >seq2058329 Length=776 Score = 86.0 bits (94), Expect = 3e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| | | |||||||||| ||||| | ||||||||||||||| |||||| |||||| Sbjct 771 TGGCCCGTAAGGGGATCGAACCCTCGACATCCGCGTTATTAGCACGGCGCTCTAACCAAC 712 Query 11516 TGAGCTAATGGGCC 11529 |||||||| |||| Sbjct 711 TGAGCTAACAGGCC 698 >seq1380847 Length=488 Score = 86.0 bits (94), Expect = 3e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| | | |||||||||| ||||| | ||||||||||||||| |||||| |||||| Sbjct 249 TGGCCCGTAAGGGGATCGAACCCTCGACATCCGCGTTATTAGCACGGCGCTCTAACCAAC 308 Query 11516 TGAGCTAATGGGCC 11529 |||||||| |||| Sbjct 309 TGAGCTAACAGGCC 322 >seq1313378 Length=473 Score = 86.0 bits (94), Expect = 3e-12 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||| | | |||||||||| ||||| | ||||||||||||||| |||||| |||||| Sbjct 234 TGGCCCGTAAGGGGATCGAACCCTCGACATCCGCGTTATTAGCACGGCGCTCTAACCAAC 293 Query 11516 TGAGCTAATGGGCC 11529 |||||||| |||| Sbjct 294 TGAGCTAACAGGCC 307 >seq2504642 Length=1431 Score = 84.2 bits (92), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| | ||||||||||||||| |||||| |||||||||||||| || Sbjct 369 GGATCGAACCCACGACATCCGCGTTATTAGCACGGCGCTCTAACCAACTGAGCTAACAGG 428 Query 11528 CCG-TCGACGAT 11538 ||| |||| ||| Sbjct 429 CCGATCGATGAT 440 >seq2419340 Length=1238 Score = 82.4 bits (90), Expect = 4e-11 Identities = 56/64 (88%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| | ||||||||||||||| |||||| |||||||||||||| || Sbjct 1148 GGATCGAACCCACGACATCCGCGTTATTAGCACGGCGCTCTAACCAACTGAGCTAACAGG 1207 Query 11528 CCGT 11531 |||| Sbjct 1208 CCGT 1211 >seq2291461 Length=1029 Score = 82.4 bits (90), Expect = 4e-11 Identities = 61/71 (86%), Gaps = 1/71 (1%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| |||| | ||||||||||||||| |||||| |||||||||||||| || Sbjct 672 GGATCGAACCCACGACATCCGCGTTATTAGCACGGCGCTCTAACCAACTGAGCTAACAGG 613 Query 11528 CCG-TCGACGA 11537 ||| |||| || Sbjct 612 CCGATCGATGA 602 >seq445506 Length=347 Score = 82.4 bits (90), Expect = 4e-11 Identities = 59/69 (86%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| |||||||||| ||||| | ||||||||||||| | |||||| ||||| Sbjct 153 TGGCCCATGTGGGGATCGAACCCTCGACATCCGCGTTATTAGCATGGCGCTCTAGCCAAC 212 Query 11516 TGAGCTAAT 11524 ||||||||| Sbjct 213 TGAGCTAAT 221 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 252724889910112