Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq2732657 134 1e-26 seq2442759 123 2e-23 seq2750648 100 2e-16 seq642385 84.2 2e-11 seq2408123 82.4 7e-11 >seq2732657 Length=3626 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||||||||| | |||||||| | |||||||||||| || | || || || | Sbjct 2691 CCACCTCTCAATCTTAGTACCAAGTGAAGAGTAGATTCCTTCTGAATATTGTAGTCTGAC 2750 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| ||||||||||| || ||||||| | || ||||| ||||||||| Sbjct 2751 AATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 2810 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| || || | || || || ||||| | | ||||||| | || || Sbjct 2811 ATACCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGTTCTACT 2870 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| |||||||| || ||||| ||||| |||||||| Sbjct 2871 TCCAAGGTGATGGTCTTTCCAGTGAGGGTTTTAACAAATATCTGCAT 2917 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | ||| | || | ||| | |||||||||||| || | ||| || || | Sbjct 2919 CCACCTCTAAGTCGGAGTACAAGGTGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGAC 2978 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| ||||| ||||| || ||||||| | |||||||| ||||| ||| Sbjct 2979 AATGTGCGGCCATCTTCCAGTTGTTTACCTGCAAAGATCAGCCTTTGCTGGTCTGGGGGA 3038 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 |||||||| || || | || || || ||||| | | || || | | || || Sbjct 3039 ATACCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCAATGGTATCTGATGGTTCAACC 3098 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| |||||||| ||||| || || |||||||||||||||||||| Sbjct 3099 TCAAGTGTGATGGTCTTTCCTGTGAGGGTTTTCACAAAGATCTGCAT 3145 Score = 118 bits (130), Expect = 9e-22 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA--ATCCT 94856 ||||| || | ||||||||||| || | ||| ||||| | | | ||| | ||| | Sbjct 1797 ACCAAATGAAGGGTAGATTCCTTCTGAATGTTGTAATC--TGACAATGTACGCCCATCTT 1854 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||||||| || || ||||||| | ||| ||||||||||| ||||| || || ||||| | Sbjct 1855 CCAGCTGCTTGCCTGCAAAGATCAGTCTCTGCTGATCTGGTGGAATGCCCTCCTTGTCCT 1914 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || ||||| || || | | ||||||| | | || || || | |||||||| | Sbjct 1915 GGATCTTTGCTTTTACATTTTCAATTGTGTCAGAGGGTTCAACTTCCAAAGTGATGGTCT 1974 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||| || || ||||| ||||||||||| Sbjct 1975 TTCCAGTGAGGGTCTTCACGAAGATCTGCAT 2005 Score = 116 bits (128), Expect = 3e-21 Identities = 172/242 (71%), Gaps = 4/242 (2%) Strand=Plus/Plus Query 94768 AAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCAC 94827 |||| ||| || || ||||||||||| | || | ||| | |||||||||||| || | Sbjct 3362 AAAAATTTGCATACCACCTCTCAATCGGAGTACAAGGTGAAGAGTAGATTCCTTCTGAAT 3421 Query 94828 GTTATAATCGCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 ||| ||||| || ||| || ||| |||| ||| ||||| ||||||| || || Sbjct 3422 GTTGTAATCAGACAA--TGTACGACCATCTTCCAACTGCTTTCCAGCAAAGATCAACCTC 3479 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 || || ||||||||||||||||| || || | || || || ||||| | | || Sbjct 3480 TGTTGGTCTGGAGGAATACCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCAATGGTA 3539 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 || | | || || |||| || ||||| ||||| || || || || || ||||||||| Sbjct 3540 TCTGATGGTTCTACCTCAAGGGTTATGGTCTTTCCTGTGAGTGTCTTGACGAAGATCTGC 3599 Query 95006 AT 95007 || Sbjct 3600 AT 3601 Score = 105 bits (116), Expect = 6e-18 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||||||| | |||||| || | || ||||| || || | ||| ||||| | Sbjct 3147 CCACCTCTCAATCGAAGCACCAAATGAAGTGTGGATTCTTTCTGGATGTTGTAATCAGAC 3206 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || || || ||| |||| ||| || || |||| || || || || || ||||| | Sbjct 3207 A-AG-GTACGACCATCTTCCAACTGCTTGCCAGCAAAAATCAACCTCTGTTGGTCTGGTG 3264 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||| ||||| || || | ||| |||||||| || | | || |||| | |||| Sbjct 3265 GAATGCCTTCCTTATCCTGAATCTTTGCCTTCACATTCTCAATGGTATCAGAAGGTTCGA 3324 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | |||||||| ||||| || || ||||| ||||| || ||||| Sbjct 3325 CTTCCAATGTGATGGTCTTTCCTGTGAGGGTTTTGACAAAAATTTGCAT 3373 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| || | ||||||||||| || | || || || || ||| ||| ||| Sbjct 2025 ACCAAATGGAGTGTAGATTCCTTCTGAATATTGTAGTCAGACAAAGTACGACCATCTTCC 2084 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 | ||| || || ||||||| ||||| ||||| ||||| || |||||||| || || | Sbjct 2085 AACTGCTTACCAGCAAAGATCAATCTCTGCTGGTCTGGGGGGATACCTTCCTTATCTTGG 2144 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || || ||||| | | || |||| | || || || | |||||||| ||| Sbjct 2145 ATCTTGGCTTTGACATTTTCAATGGTATCAGATGGTTCTACTTCCAATGTGATGGTCTTT 2204 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||||||| || ||||| ||||||||||| Sbjct 2205 CCAGTAAGTGTCTTCACGAAGATCTGCAT 2233 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 ||||||||||| || | || || || || |||| ||| || ||||| || || Sbjct 2265 GTAGATTCCTTCTGAATATTGTAGTCAGACAGAGTGCGACCATCTTCAAGCTGCTTGCCT 2324 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| | || ||||| |||||||| |||||||| ||||| | ||| |||||||| Sbjct 2325 GCAAAGATCAGCCTCTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGAATCTTTGCCTTT 2384 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | | ||||| | | || || || | || || |||||||| ||||| || Sbjct 2385 ACATTCTCAATGGTGTCTGAAGGCTCCACTTCTAGGGTAATTGTTTTTCCTGTAAGGGTC 2444 Query 94991 TTCACAAAGATCTGCAT 95007 |||||||| || ||||| Sbjct 2445 TTCACAAAAATTTGCAT 2461 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || |||| || || || || ||||| ||||| || ||||| || Sbjct 2534 ATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGTTGATCAGGAGGGATGCCTTCCTT 2593 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || | || || | | ||| |||| | || || |||| || || Sbjct 2594 ATCTTGGATCTTAGTTTTAACATTTTCAATAGTATCAGATGGCTCAACCTCAAGTGTTAT 2653 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||||||| || || |||||||||||||||||||| Sbjct 2654 GGTTTTTCCTGTGAGGGTTTTCACAAAGATCTGCAT 2689 >seq2442759 Length=1285 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| |||| | ||||| || | ||||||||||| || | ||| ||||| | Sbjct 87 CCACCTCTTAATCTAAGGACCAAATGAAGTGTAGATTCCTTCTGGATGTTGTAATCTGAC 146 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| |||||||| ||||| ||||||| || || ||||| || || ||| Sbjct 147 AATGTGCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCGGGTGGA 206 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || || || | || |||||||| || ||| ||||| | | || || Sbjct 207 ATGCCCTCCTTATCTTGGATCTTTGCCTTTACATTTTCGATGGTGTCTGAAGGCTCTACC 266 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 |||| || ||||| || ||||| || || |||||||||||||||||| Sbjct 267 TCAAGGGTAATGGTCTTCCCAGTGAGTGTCTTCACAAAGATCTGCATG 314 >seq2750648 Length=12224 Score = 100 bits (110), Expect = 2e-16 Identities = 127/174 (73%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 94751 ATCGCTAACGGTTTTTTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAA 94810 |||| || |||| ||| || || || | || |||| | || ||| ||||| || | Sbjct 11077 ATCGTTATCGGTGATTTTAAGTTGTATCCCCC--CTCTAAGTCTCAAAACCAAATGAATT 11020 Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 |||||||| ||||| | ||||||||| | ||| || ||| || | ||||| ||| Sbjct 11019 GTAGATTCTTTTTGAATGTTATAATCAGTAATACATTTATTATCTTCTAATTGTTTACCG 10960 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTT 94924 | || ||||||| || ||||| |||||||||||||||||||| | |||||| Sbjct 10959 GCGAAAATTAATCGCTGTTGATCGGGAGGAATACCTTCTTTGTCTTGTATTTTT 10906 >seq642385 Length=370 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| |||| | ||||| || | ||||||||||| || | ||| || || | Sbjct 40 CCACCTCTTAATCTAAGGACCAAATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCTGAC 99 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| |||||||| ||||| ||||||| || || || || ||||| || Sbjct 100 AATGTGCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGTTGGTCTGGGGGG 159 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| || || | || || ||||| || | | | ||| | ||| || Sbjct 160 ATCCCTTCCTTATCTTGGATCTTGGCCTTCACAATTTCAATTGAGTCTG-ATGGATCTCG 218 Query 94961 T-CAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||| ||| | ||| ||||| || || || || || ||||||||||| Sbjct 219 TACAAGCGTAAGGGTCTTTCCTGTTAGTGTCTTGACGAAGATCTGCAT 266 >seq2408123 Length=1217 Score = 82.4 bits (90), Expect = 7e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 94903 ACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTC 94962 |||||||||||| | ||| || ||||| || | | ||| |||| | ||||| || Sbjct 711 ACCTTCTTTGTCCTGAATCTTAGCCTTTACATTTTCAATAGTATCAGATGGCTCGACCTC 770 Query 94963 AATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | |||||||| || |||||||| |||||||||||||||||||| Sbjct 771 TAGAGTGATGGTCTTGCCAGTAAGCGTTTTCACAAAGATCTGCAT 815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433265642925344