Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2732095 206 3e-48 >seq2732095 Length=3591 Score = 206 bits (228), Expect = 3e-48 Identities = 520/785 (66%), Gaps = 12/785 (2%) Strand=Plus/Minus Query 21127 TTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTT 21186 ||||||||||||||| | | ||| | | ||| | ||||||||| ||| ||| Sbjct 1830 TTAAAAATCAGCATCCAGAGTGAAGCTACGCTGGTCTGTGCTTGACATAACTCCACATTT 1771 Query 21187 TTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTC 21246 ||| || || | ||||| ||||| || || || || || || || | ||||| ||| Sbjct 1770 TTGGTACTCGCCTACTCTCTTTTCAAAGAAGTTGGTTTTACCCTCAAGAGATATGTTTTC 1711 Query 21247 CATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAA 21306 ||| || ||||||||||| || | || | | |||| ||| || || || | || || Sbjct 1710 CATGAAGTCAAATGGATTCTCTGCATTGTAAAGCTTATCACAGCCTAGCTC-CACAAGAA 1652 Query 21307 -TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATT 21365 | |||||| |||||||| || ||||| | ||| | |||| |||||||| || | | Sbjct 1651 GACGATCTGCAACAAATTCAATGTATTGCCTCATAAGAACACAGTTCATACCAATGAGAT 1592 Query 21366 TTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAAT--TAT 21423 | ||||| ||||| | || || || || ||| || |||||| ||| |||| || Sbjct 1591 TGACAGGCAGAGCATCAGTTAAGAATTCTTGTTCAATTTTGACGGCATCATCAATGATAG 1532 Query 21424 ATTTATTATCCTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAA 21483 | | | || || | || |||||| | | || || || ||||| | ||| ||||| Sbjct 1531 ACTGAACATGCT-GTTG-ACTAGGCTTGTTTACCAAATGCTTGAACATGAGACAGGCAAA 1474 Query 21484 ATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCAT 21543 ||| || | |||||||||||| ||||||||||| ||| || | ||| ||||| Sbjct 1473 GTCAGTGTGAAGACCTTCATCCCTGGAGATTAATTCATTGCTAAAGGTAAGACCAGGCAT 1414 Query 21544 TAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTC 21603 | || | || || | |||||| || | ||||| | || |||||||| || || Sbjct 1413 CAGGCCACGTTTCTTGAGCCAAAAGATCGCAGCAAAGGAACCGCTGAAGAAAATACCTTC 1354 Query 21604 AACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTT 21663 || |||||||| |||| | |||||| | || ||| || || |||||| | Sbjct 1353 CACAGCAGCAAAGGCAATGATACGTTCAGCATAACTAGCAGTTTCATGGGCAATCCATCT 1294 Query 21664 TTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATG 21723 ||||| | ||||| | ||| | |||| | || |||| || || || || Sbjct 1293 CAGAGCCCAGTCAGCCTTCTTTTTGACACAAGGCAAGGTCTCAACGGCATTGAACAGTCT 1234 Query 21724 AtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATG 21783 ||||| ||| || || | ||| ||| ||||||||| || Sbjct 1233 ATTTTGTTCTTCAGAGTCTCTGATGTAGGTGTTGATGAGTAAACTGTACATTTCACTGTG 1174 Query 21784 TATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAAC--C 21841 |||||||| || || || || || || ||||| |||||||| |||| | |||||| | Sbjct 1173 GATATTTTCCATTGCAATTTGGAAACCATAAAAGCATCTTGCTTCTGGAACTTGAACTTC 1114 Query 21842 TCGGAATAAAATCGTTGAGCCAAG-TTTTCATTTACTATTCCATCACTGGCGGCAAAAAA 21900 | || | || || | || |||| |||||||| || || |||||| || || ||||| Sbjct 1113 TTGGCAGAATCTC-TCGA--CAAGATTTTCATTAACAATCCCATCAGAAGCAGCGAAAAA 1057 Query 21901 TGCCA 21905 ||||| Sbjct 1056 TGCCA 1052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 513611976082880