Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2732095 266 4e-66 >seq2732095 Length=3591 Score = 266 bits (294), Expect = 4e-66 Identities = 531/786 (68%), Gaps = 3/786 (0%) Strand=Plus/Minus Query 32998 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33057 ||||||||||| ||||||||| || || || | ||||| || || || ||||| || Sbjct 1787 GACATAACTCCACATTTTTGGTACTCGCCTACTCTCTTTTCAAAGAAGTTGGTTTTACCC 1728 Query 33058 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 33117 || | ||||| ||||||||||| ||||| ||||| |||| |||| || | | | Sbjct 1727 TCAAGAGATATGTTTTCCATGAAGTCAAATGGATTCTCTGCATTGTAAAGCTTATCACAG 1668 Query 33118 CCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAA 33177 || | || || | | ||| || || ||||| || ||| |||| | |||| Sbjct 1667 CCTAGCTCCACAAGAAGACGATCTGCAACAAATTCAATGTATTGCCTCATAAGAACACAG 1608 Query 33178 TTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACC 33237 ||||| || || || || || || ||||| |||| | |||||||||||||| || Sbjct 1607 TTCATACCAATGAGATTGACAGGCAGAGCATCAGTTAAGAATTCTTGTTCAATTTTGACG 1548 Query 33238 GCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAAC 33297 ||||| || ||||| ||| | || ||| || | | ||||| || ||| Sbjct 1547 GCATCATCAATGATAGACTGAACATGCTGTTGACTAGGCTTGTTTACCAAATGCTTGAAC 1488 Query 33298 ATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAAC 33357 || | ||| || || || ||| ||||| || || || |||| ||| ||| ||| Sbjct 1487 ATGAGACAGGCAAAGTCAGTGTGAAGACCTTCATCCCTGGAGATTAATTCATTGCTAAAG 1428 Query 33358 GTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAA 33417 || || || ||||| |||||||| || || |||||||| || | ||| || || || Sbjct 1427 GTAAGACCAGGCATCAGGCCACGTTTCTTGAGCCAAAAGATCGCAGCAAAGGAACCGCTG 1368 Query 33418 AAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCA 33477 ||||| || ||||| || |||||||||||||| | | || |||||| || | ||| Sbjct 1367 AAGAAAATACCTTCCACAGCAGCAAAGGCAATGATACGTTCAGCATAACTAGCAGTTTCA 1308 Query 33478 TGT---ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 33534 || ||||| | ||||||| || ||||||||||| |||||||||| || || | | Sbjct 1307 TGGGCAATCCATCTCAGAGCCCAGTCAGCCTTCTTTTTGACACAAGGCAAGGTCTCAACG 1248 Query 33535 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 33594 ||||| || || |||| ||| | | ||| | | || || | ||| | | ||| Sbjct 1247 GCATTGAACAGTCTATTTTGTTCTTCAGAGTCTCTGATGTAGGTGTTGATGAGTAAACTG 1188 Query 33595 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 33654 |||||||| || || ||||| || || || || || || || || ||||| || || Sbjct 1187 TACATTTCACTGTGGATATTTTCCATTGCAATTTGGAAACCATAAAAGCATCTTGCTTCT 1128 Query 33655 GTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTG 33714 | || || |||||| || |||| || | | ||||||||| || || || ||| Sbjct 1127 GGAACTTGAACTTCTTGGCAGAATCTCTCGACAAGATTTTCATTAACAATCCCATCAGAA 1068 Query 33715 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTC 33774 || || ||||| |||| ||||| || |||| | | || || | ||||||| | Sbjct 1067 GCAGCGAAAAATGCCAGCACATGGGAAATGAAATGTCTCTCCTCATCCTTAAGTTTATCC 1008 Query 33775 CAATCA 33780 || ||| Sbjct 1007 CAGTCA 1002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 601527845769920