Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq2750648 159 3e-34 seq2732095 118 1e-21 seq1400646 82.4 7e-11 >seq2750648 Length=12224 Score = 159 bits (176), Expect = 3e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 ||||||| | || ||||||||| | ||||| || | || || || ||| ||||||| Sbjct 10822 AATGCAAATATTCGTAAAAACACTCACTGGTAAGACAATTACTATAGAAGTAGAATCGGG 10881 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 || || || || || | |||||||| || ||||||||||| || ||||||||||| Sbjct 10882 AGAGACAATAGAAAAACTTAAACAAAAAATACAAGACAAAGAAGGTATTCCTCCCGATCA 10941 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 ||| || | |||| || ||| |||||| | |||||| ||| | | | || ||||| Sbjct 10942 ACAGCGATTAATTTTCGCCGGTAAACAATTAGAAGATAATAAATGTATTACTGATTATAA 11001 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 |||||||||||||||||| || ||| |||| ||||||||||||| || Sbjct 11002 CATTCAAAAAGAATCTACAATTCATTTGGTTTTGAGACTTAGAGGGGG 11049 >seq2732095 Length=3591 Score = 118 bits (130), Expect = 1e-21 Identities = 344/524 (66%), Gaps = 27/524 (5%) Strand=Plus/Minus Query 119645 GTACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATTCAT 119704 ||||||||| || | |||||||| || || || || ||||||||||||||||| | ||| Sbjct 1767 GTACTCGCCTACTCTCTTTTCAAAGAAGTTGGTTTTACCCTCAAGAGATATGTTTTCCAT 1708 Query 119705 AAACTCGAAAGGATTTGCAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAACAGTCG 119764 || || || ||||| | | ||| || |||| || |||| | ||| | | || || Sbjct 1707 GAAGTCAAATGGATTCTCTGCATTGTAAAGCTTATCACAGCCTAGCTCCACAAGAAGACG 1648 Query 119765 ATCTGCCACAAACTCGATGTATTCGCACAT-GGATTGCGAATTCATGCCCAACATAGCGA 119823 |||||| ||||| || ||||||| | ||| || | | ||||| || | | | || Sbjct 1647 ATCTGCAACAAATTCAATGTATTGCCTCATAAGAACAC-AGTTCATACCAATGAGATTGA 1589 Query 119824 CCGGTAAAGCATTGGTAAAGAAATCCTTTTCAATGTCGACCGCTTCTACAA--ACATACT 119881 | || | ||||| || ||||| || | |||||| | ||| || || ||| | | ||| Sbjct 1588 CAGGCAGAGCATCAGTTAAGAATTCTTGTTCAATTTTGACGGCATCATCAATGATAGACT 1529 Query 119882 CAACACCTTGGTCTTGGAGA-GCTTGTTCTTTTCGGGAATATATTTATTGTAGTATAGAC 119940 |||| || | ||| | ||||||| | | | ||| | |||| Sbjct 1528 GAACA---TGCTGTTGACTAGGCTTGTT---------TACCAAATGCTTGAACATGAGAC 1481 Query 119941 AAGCAAAGTCGGTGTGTAGTCCTTCGTCTCTGGAAATGAGTTCGTTGCTGTAAGTCAAGC 120000 | |||||||| ||||| || ||||| || ||||| || | ||| ||||| | || | | Sbjct 1480 AGGCAAAGTCAGTGTGAAGACCTTCATCCCTGGAGATTAATTCATTGCTAAAGGTAAGAC 1421 Query 120001 CGGGTAGAGCTCCTTTTTTCGAGTCTTTGATATAGTAGATTGCAGCAAAACTAC--CAGa 120058 | || | || |||| |||| | |||| |||||||| || | || Sbjct 1420 CAGGCATCAGGCCACGTTTC------TTGAGCCAAAAGATCGCAGCAAAGGAACCGCTGA 1367 Query 120059 aaaaaaGACGCCTTCGACGATAGCAAAAGCGACCATGCGTTCGGCGAATGTGGCAGATTG 120118 | |||| | ||||| || |||||| || | || ||||| || | | |||| || Sbjct 1366 AGAAAATA--CCTTCCACAGCAGCAAAGGCAATGATACGTTCAGCATAACTAGCAGTTTC 1309 Query 120119 ATTTTCGATCCATTTTTGAGCCCAAGCCGCCTTCTGCTTGACAC 120162 || | |||||| | ||||||| | ||||||| ||||||| Sbjct 1308 ATGGGCAATCCATCTCAGAGCCCAGTCAGCCTTCTTTTTGACAC 1265 >seq1400646 Length=492 Score = 82.4 bits (90), Expect = 7e-11 Identities = 117/163 (72%), Gaps = 4/163 (2%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA-- 26825 ||||||| | || ||||||||| | ||||| || | || | || ||| ||||| | Sbjct 165 AATGCAAATATTCGTAAAAACACTCACTGGTAAGACAATTAATATAGAAGTAGAAGCGGG 106 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 || || | || || || | |||||| | || ||||||| ||| || ||||||||| Sbjct 105 AAAGAAA--ATAGAAAAACTTAAACAACAAATACAAGACAAAGTAGGTATTCCTCCCGAT 48 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATA 26928 ||||| || | |||| || ||| |||||| | |||||| ||| Sbjct 47 CAACAGCGATTAATTTTCGCCGGTAAACAATTAGAAGATAATA 5 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462204119904640