Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2732095 158 3e-33 seq2738736 93.3 1e-13 seq177455 84.2 5e-11 >seq2732095 Length=3591 Score = 158 bits (174), Expect = 3e-33 Identities = 351/523 (67%), Gaps = 14/523 (3%) Strand=Plus/Plus Query 22435 AAGAATAAGGCAGATTGGGCGCTGAAATGGATGAACAATGAACGTTCA---TTCGCGGAA 22491 || || ||||| || ||||| |||| |||||| | ||||| | | | || ||| Sbjct 1270 AAAAAGAAGGCTGACTGGGCTCTGAGATGGATTGCCCATGAAACTGCTAGTTATGCTGAA 1329 Query 22492 CGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCAATC 22551 ||| | ||||| ||||||| || ||||| |||||||| || | ||| ||| ||| Sbjct 1330 CGTATCATTGCCTTTGCTGCTGTGGAAGGTATTTTCTTCAGCGGTTCCTTTGCTGCGATC 1389 Query 22552 TTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATTAGC 22611 |||||||| || ||||||| | ||||| ||||| || ||| ||||| ||||| | Sbjct 1390 TTTTGGCTCAAGAAACGTGGCCTGATGCCTGGTCTTACCTTTAGCAATGAATTAATCTCC 1449 Query 22612 CGAGATGAGGGTCTTCATACCGATTTTGCGTGTATGCTATATCGGAATCATATCATTCAT 22671 | ||||| |||||||| || || ||||| ||| | | | || || ||| || | Sbjct 1450 AGGGATGAAGGTCTTCACACTGACTTTGCCTGTCTCATGT-TC--AAGCAT----TTGGT 1502 Query 22672 AAACTTCCATATGAAAC----TGTACTTGATATTATTACAAATGCAGTTGAACTTGAACG 22727 |||| | || ||| ||| | ||| ||| |||| || || |||||| Sbjct 1503 AAACAAGCCTAGTCAACAGCATGTTCAGTCTATCATTGATGATGCCGTCAAAATTGAACA 1562 Query 22728 TCTATTTATTTGCGAGGCGTTACCAGTAAGTCTCATTGGTATCAATGCCGAATCAATGAG 22787 ||| | || || | || || | |||||||||||| || | ||||| Sbjct 1563 AGAATTCTTAACTGATGCTCTGCCTGTCAATCTCATTGGTATGAACTGTGTTCTTATGAG 1622 Query 22788 TACATATATTAAATTTGTTGCAGATCGTCTATTAATTTCACTCGGTTATGCAAAGCATTA 22847 ||| ||| ||||||||||||||||||| | | || || | || |||| ||| Sbjct 1623 GCAATACATTGAATTTGTTGCAGATCGTCTTCTTGTGGAGCTAGGCTGTGATAAGCTTTA 1682 Query 22848 TAACGTCGTTAATCCATTTGAATGGATGGAACTTATTTCACTTGAAGGAAAGACCAATTT 22907 || | | ||||||||||| | |||||| || || ||||| || || ||||| || Sbjct 1683 CAATGCAGAGAATCCATTTGACTTCATGGAAAACATATCTCTTGAGGGTAAAACCAACTT 1742 Query 22908 CTTCGAAAAAAGAGTTGGTGAATACCAAAAAGCAGGTGTTATG 22950 ||| ||||| ||||| || || ||||||||| || |||||| Sbjct 1743 CTTTGAAAAGAGAGTAGGCGAGTACCAAAAATGTGGAGTTATG 1785 >seq2738736 Length=4073 Score = 93.3 bits (102), Expect = 1e-13 Identities = 155/224 (69%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 111598 TTGATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAA 111657 ||||| || ||||||||||||| | ||| ||||| || ||| |||| ||||| || Sbjct 1794 TTGATACCATCAAGAACAACCCAAATGATCGACGCATAATCATGTGTGCTTGGAATCCGG 1853 Query 111658 ATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACG 111717 || | |||||||| | || ||||| || | |||| ||||||||||| Sbjct 1854 TTGATGTTCTTAAAATGGCCTTGCCTCCATGCCACTGTCTGTGTCAGTTTTATGTGGCTA 1913 Query 111718 ACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTGGTCTTGGTGTTCCGT 111777 | || || || ||||| | || || |||| || ||||| |||||||| ||||| | Sbjct 1914 ATGGAGAACTCTCTTGCCAGCTATACCAAAGATCAGCAGATATGGGTCTTGGAGTTCCTT 1973 Query 111778 TTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 | || ||||| ||||| || || || || | | | || || ||| Sbjct 1974 TCAACATTGCTAGTTATGCTCTTCTCACCTACATGATTGCCCAT 2017 >seq177455 Length=318 Score = 84.2 bits (92), Expect = 5e-11 Identities = 114/158 (72%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 364981 AAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCATTGATATGGCGGCC 365040 |||||| | |||||||| || ||||| || || | | | | || ||||| || Sbjct 142 AAGCCT-TGTACAAAACTGTGTGGGAGATCTCTCAGAAAGTGGTACTGGAGATGGCTGCT 200 Query 365041 GATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACC 365100 ||||| ||||| ||||| ||||||||||||| | ||| | ||| || |||| | | Sbjct 201 GATCGTGGTGCATTTATTGATCAGAGCCAGTCGCTCAACATTCACATTGCTGAGCCTAAC 260 Query 365101 TCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAA 365138 | | |||||||||||| ||||||||||| | ||||| Sbjct 261 TATGGCAAGCTTACATCTATGCATTTCTATGCTTGGAA 298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1257418860656784