Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq2750648 154 1e-32 seq2442759 105 6e-18 seq2732657 100 2e-16 seq1400646 84.2 2e-11 >seq2750648 Length=12224 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || ||||||||| | ||||| || | ||||| || ||||| || | Sbjct 10822 AATGCAAATATTCGTAAAAACACTCACTGGTAAGACAATTACTATAGAAGTAGAATCGGG 10881 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || || || | |||||||| || ||||||||||| || ||||||||||| Sbjct 10882 AGAGACAATAGAAAAACTTAAACAAAAAATACAAGACAAAGAAGGTATTCCTCCCGATCA 10941 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 |||| || | |||| || ||| || ||| | |||||| | | | | | |||||||| Sbjct 10942 ACAGCGATTAATTTTCGCCGGTAAACAATTAGAAGATAATAAATGTATTACTGATTATAA 11001 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||||||||||||||||||||||||||| || || ||| | ||||| || Sbjct 11002 CATTCAAAAAGAATCTACAATTCATTTGGTTTTGAGACTTAGAGGGGG 11049 >seq2442759 Length=1285 Score = 105 bits (116), Expect = 6e-18 Identities = 165/234 (71%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 23986 ACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGG 24045 |||| ||||| | ||||| || ||| | ||||| || | |||||| | || || ||| Sbjct 318 ACAACATGCAGATCTTTGTGAAGACACTCACTGGGAAGACCATTACCCTTGAGGTAGAGC 259 Query 24046 CCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCG 24105 | ||||||||||| | || || |||||| || || || ||||| || |||| Sbjct 258 CTTCAGACACCATCGAAAATGTAAAGGCAAAGATCCAAGATAAGGAGGGCATTCCACCCG 199 Query 24106 ATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAG--AAACGTCAGCGA 24163 | || ||||| |||| | | || ||||| || ||||||| | | | |||| || Sbjct 198 ACCAGCAGAGGTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGCACATTGTCA--GA 141 Query 24164 TTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 ||| ||||| || || ||||||||| ||||||| || | ||||| ||||| || Sbjct 140 TTACAACATCCAGAAGGAATCTACACTTCATTTGGTCCTTAGATTAAGAGGTGG 87 >seq2732657 Length=3626 Score = 100 bits (110), Expect = 2e-16 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| | |||||||| | || ||| | ||||| || ||| | Sbjct 2917 ATGCAGATATTTGTTAAAACCCTCACTGGAAAGACCATCACCTTGGAAGTAGAA-CCATC 2859 Query 24051 -GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||| || | |||||| ||||| || || ||||| || ||||| || || Sbjct 2858 TGACACCATTGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGTATTCCTCCAGACCA 2799 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAAC--GTCAGCGATTAT 24167 ||||| ||||| | | || || || || ||||||| | | | ||||| | || Sbjct 2798 GCAGAGGCTGATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACATTGTCAG--ACTAC 2741 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGG 24217 || ||||| || |||||||| |||| || || ||||||||||||| || Sbjct 2740 AATATTCAGAAGGAATCTACTCTTCACTTGGTACTAAGATTGAGAGGTGG 2691 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | |||||||| | || || | ||||| || || Sbjct 2005 ATGCAGATCTTCGTGAAGACCCTCACTGGAAAGACCATCACTTTGGAAGTTGAACCCTCT 1946 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || ||| |||||| ||||| || ||||| || || ||||| Sbjct 1945 GACACAATTGAAAATGTAAAAGCAAAGATCCAGGACAAGGAGGGCATTCCACCAGATCAG 1886 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAG--AAACGTCAGCGATTATA 24168 ||||||||||| | | |||||||| || ||||||| | | |||| ||||| | Sbjct 1885 CAGAGACTGATCTTTGCAGGCAAGCAGCTGGAAGATGGGCGTACATTGTCA--GATTACA 1828 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||||| || |||||||| ||||||| || Sbjct 1827 ACATTCAGAAGGAATCTACCCTTCATTTGGT 1797 >seq1400646 Length=492 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/159 (72%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC-- 24047 ||||||| | || ||||||||| | ||||| || | |||| || ||||| || || Sbjct 165 AATGCAAATATTCGTAAAAACACTCACTGGTAAGACAATTAATATAGAAGTAGAAGCGGG 106 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 || || | || || || | |||||| | || ||||||| ||| || ||||||||| Sbjct 105 AAAGAAA--ATAGAAAAACTTAAACAACAAATACAAGACAAAGTAGGTATTCCTCCCGAT 48 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT 24146 |||||| || | |||| || ||| || ||| | |||||| Sbjct 47 CAACAGCGATTAATTTTCGCCGGTAAACAATTAGAAGAT 9 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415522695480360