Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2732095 289 3e-73 seq2683473 87.8 2e-12 seq2129313 87.8 2e-12 >seq2732095 Length=3591 Score = 289 bits (320), Expect = 3e-73 Identities = 567/833 (68%), Gaps = 14/833 (2%) Strand=Plus/Minus Query 32315 TTAAAAGTCAACATCTAGAGAAAA---ATGATTGTCTT--CTTGAGACATAACTCCCATT 32369 |||||| ||| |||| |||| || | | | |||| ||||| ||||||||| | Sbjct 1830 TTAAAAATCAGCATCCAGAGTGAAGCTACGCTGGTCTGTGCTTGA--CATAACTCCACAT 1773 Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429 |||||||| || || || | ||||| || || || |||||||| || | ||||| ||| Sbjct 1772 TTTTGGTACTCGCCTACTCTCTTTTCAAAGAAGTTGGTTTTACCCTCAAGAGATATGTTT 1713 Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 32489 |||||||| || |||||||| |||| |||| || | | | || | || || Sbjct 1712 TCCATGAAGTCAAATGGATTCTCTGCATTGTAAAGCTTATCACAGCCTAGCTCCACAAGA 1653 Query 32490 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 32549 | | |||||| |||||||| || ||| |||| | |||| ||||| || || || Sbjct 1652 AGACGATCTGCAACAAATTCAATGTATTGCCTCATAAGAACACAGTTCATACCAATGAGA 1593 Query 32550 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 32609 || || || ||||| |||| | |||||||||||||| ||| || || || ||| Sbjct 1592 TTGACAGGCAGAGCATCAGTTAAGAATTCTTGTTCAATTTTGACGGCATCATCAATGATA 1533 Query 32610 GATCTTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAACATGCGA 32667 || || | || ||| || || ||| | |||| || ||||| | ||| || | Sbjct 1532 GACTGAACATGCTGTTGACTAGGCTTGTTTACCA--AATGCTTGAACATGAGACAGGCAA 1475 Query 32668 AATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 32727 | || ||| ||||| || || || |||||||| ||| ||| || || || |||| Sbjct 1474 AGTCAGTGTGAAGACCTTCATCCCTGGAGATTAATTCATTGCTAAAGGTAAGACCAGGCA 1415 Query 32728 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTT 32787 | |||||||| || || |||||||| || | ||||| || || |||||||| |||| Sbjct 1414 TCAGGCCACGTTTCTTGAGCCAAAAGATCGCAGCAAAGGAACCGCTGAAGAAAATACCTT 1355 Query 32788 CTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT---ATCCACT 32844 | || || ||||||||||| | | || |||||| || | ||||| ||||| Sbjct 1354 CCACAGCAGCAAAGGCAATGATACGTTCAGCATAACTAGCAGTTTCATGGGCAATCCATC 1295 Query 32845 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGAT 32904 | ||||||| || ||||||||||| |||||||||| ||||| | ||||| || || Sbjct 1294 TCAGAGCCCAGTCAGCCTTCTTTTTGACACAAGGCAAGGTCTCAACGGCATTGAACAGTC 1235 Query 32905 AGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAAT 32964 |||| ||| | | ||| | | || || | || | | ||| |||||||| | Sbjct 1234 TATTTTGTTCTTCAGAGTCTCTGATGTAGGTGTTGATGAGTAAACTGTACATTTCACTGT 1175 Query 32965 GAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTT 33024 | || ||||| || || ||||| || || || |||||||| || || | || || |||| Sbjct 1174 GGATATTTTCCATTGCAATTTGGAAACCATAAAAGCATCTTGCTTCTGGAACTTGAACTT 1115 Query 33025 CTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 33084 || || |||| || | | ||||||||| || || || ||| || || ||||| | Sbjct 1114 CTTGGCAGAATCTCTCGACAAGATTTTCATTAACAATCCCATCAGAAGCAGCGAAAAATG 1055 Query 33085 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCA 33137 ||| ||||| || |||| | | || || | ||||||| ||| ||| Sbjct 1054 CCAGCACATGGGAAATGAAATGTCTCTCCTCATCCTTAAGTTTATCCCAGTCA 1002 Score = 89.7 bits (98), Expect = 6e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 33147 TTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTC 33206 ||||| | ||||||||||||||| ||||||||||| || | || || || ||||| || Sbjct 171 TTAGACAGATCCACTTCTTCCACAGTCCAAAATGAAGCTACAGCTTTCTTGTACATCTTG 112 Query 33207 CAGATGTCATGATATTGAATTGGAAAAATAACAAATC 33243 |||| || ||| | |||||||| ||||| ||||||| Sbjct 111 AAGATATCTTGAAACTGAATTGGGAAAATGACAAATC 75 >seq2683473 Length=2397 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 62801 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 62860 || || ||||| |||||| |||||||||||| || ||||| ||||| || |||||| | Sbjct 1602 ATTTCTGTGCAGAGATTAGAACACTTGATGGTACCCAAATTCTGTTGGTTGCTCTTTCTA 1661 Query 62861 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTC 62901 || || ||||| || || || ||| |||| || |||||||| Sbjct 1662 TTGCATGCATCTTTGTATAGCATGTATGGCGTTCCAGTTTC 1702 >seq2129313 Length=838 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 62801 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 62860 || || ||||| |||||| |||||||||||| || ||||| ||||| || |||||| | Sbjct 793 ATTTCTGTGCAGAGATTAGAACACTTGATGGTACCCAAATTCTGTTGGTTGCTCTTTCTA 734 Query 62861 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTC 62901 || || ||||| || || || ||| |||| || |||||||| Sbjct 733 TTGCATGCATCTTTGTATAGCATGTATGGCGTTCCAGTTTC 693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611845260675200