Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2732657 143 2e-29 seq2750648 129 5e-25 seq1400646 82.4 6e-11 >seq2732657 Length=3626 Score = 143 bits (158), Expect = 2e-29 Identities = 170/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | || || ||| | || || | ||||||||| | || Sbjct 2461 ATGCAAATTTTTGTGAAGACCCTTACAGGAAAAACAATTACCCTAGAAGTGGAGCCTTCA 2402 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || ||| | ||| |||| | ||| ||||| ||||| || || || ||||| Sbjct 2401 GACACCATTGAGAATGTAAAGGCAAAGATTCAA-GACAAGGAAGGTATCCCTCCAGACCA 2343 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | || ||||| ||||| || | ||||||| ||||||| || || ||||| Sbjct 2342 GCAGAGGCTGATCTTTGCAGGCAAGCAGCTTGAAGATGGTCGCACTCTGTCTGACTACAA 2283 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||||| || ||||| || || |||||||| || ||||| ||||| || Sbjct 2282 TATTCAGAAGGAATCTACACTCCATTTAGTTCTTAGGCTTAGAGGTGG 2235 Score = 143 bits (158), Expect = 2e-29 Identities = 161/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| || || | || || || |||||||| | ||||| || | ||| Sbjct 3373 ATGCAAATTTTTGTCAAAACCCTCACAGGAAAGACCATCACATTGGAAGTCGAACCTTCT 3314 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || || ||| ||||| |||| | ||| || || ||||| |||||||| ||||| Sbjct 3313 GATACCATTGAGAATGTGAAGGCAAAGATTCAG-GATAAGGAAGGCATTCCACCAGACCA 3255 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||| || | |||||||| ||||| || || ||||||| ||| || || |||||||| Sbjct 3254 ACAGAGGTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGTCGTACCTTGTCTGATTACAA 3195 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||||||||| || ||||| ||||| Sbjct 3194 CATCCAGAAAGAATCCACACTTCATTTGGTGCT 3162 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | || || ||| |||| ||| | || || ||| | ||| Sbjct 2689 ATGCAGATCTTTGTGAAAACCCTCACAGGAAAAACCATAACACTTGAGGTTGAGCCATCT 2630 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || ||||| || | || || ||| || || ||||| || || ||||| ||| Sbjct 2629 GATACTATTGAAAATGTTAAAACTAAGATCCAAGATAAGGAAGGCATCCCTCCTGATCAA 2570 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | |||||||| || || || | ||||||| ||| || || ||||||||| Sbjct 2569 CAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAAT 2510 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || |||||||| |||||||| || ||||| ||||| || Sbjct 2509 ATCCAGAAGGAGTCCACGCTCCATTTAGTACTCAGGCTCAGAGGTGG 2463 Score = 109 bits (120), Expect = 5e-19 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || || |||||||| | ||||| || | ||| Sbjct 2233 ATGCAGATCTTCGTGAAGACACTTACTGGAAAGACCATCACATTGGAAGTAGAACCATCT 2174 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 || || || || |||| |||| || | || || || ||||| || || || || Sbjct 2173 GATACCATTGAAAATGTCA---AAGCCAAGATCCAA-GATAAGGAAGGTATCCCCCCAGA 2118 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| | | || ||||| || || || || ||||||| ||| ||| || || || Sbjct 2117 CCAGCAGAGATTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACTTTGTCTGACTA 2058 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||| || ||||| || || ||||| || || ||||| ||||| || Sbjct 2057 CAATATTCAGAAGGAATCTACACTCCATTTGGTTCTCAGGCTTAGAGGCGG 2007 Score = 109 bits (120), Expect = 5e-19 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| |||||||| || || | || || || ||||||| | ||||| || | ||| Sbjct 2917 ATGCAGATATTTGTTAAAACCCTCACTGGAAAGACCATCACCTTGGAAGTAGAACCATCT 2858 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| |||| || | || || || ||||| ||||| || || Sbjct 2857 GACACCATTGAAAATGTCA---AAGCTAAGATCCAA-GATAAGGAAGGTATTCCTCCAGA 2802 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||| || | || ||||| || ||||| | ||||||| ||||| || || || Sbjct 2801 CCAGCAGAGGCTGATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACATTGTCAGACTA 2742 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 ||||||||| || ||||| || || || || || ||||| | ||||| || Sbjct 2741 CAATATTCAGAAGGAATCTACTCTTCACTTGGTACTAAGATTGAGAGGTGG 2691 >seq2750648 Length=12224 Score = 129 bits (142), Expect = 5e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || |||||||||||| ||||| || | || ||||| | || || | ||||| || || Sbjct 10819 AATAATGCAAATATTCGTAAAAACACTCACTGGTAAGACAATTACTATAGAAGTAGAATC 10878 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 | || || || || ||| || |||||||| ||||||||||| ||||| || || Sbjct 10879 GGGAGAGACAATAGAAAAACTTAAACAAAAAATACAAGACAAAGAAGGTATTCCTCCCGA 10938 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 |||||||| | ||||| ||||| ||||||||||||||| || | | ||||| Sbjct 10939 TCAACAGCGATTAATTTTCGCCGGTAAACAATTAGAAGATAATAAATGTATTACTGATTA 10998 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || |||||||||||||| || | ||||| || | || || ||||| || Sbjct 10999 TAACATTCAAAAAGAATCTACAATTCATTTGGTTTTGAGACTTAGAGGGGG 11049 >seq1400646 Length=492 Score = 82.4 bits (90), Expect = 6e-11 Identities = 116/163 (71%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 24995 AACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTC 25054 || |||||||||||| ||||| || | || ||||| | || | | ||||| || | Sbjct 168 AATAATGCAAATATTCGTAAAAACACTCACTGGTAAGACAATTAATATAGAAGTAGAAGC 109 Query 25055 GTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 | | | || || ||| || ||| |||| ||||||| ||| ||||| || || Sbjct 108 GGGAAAGAAAATAGAAAAACTTAAACAACAAATACAAGACAAAGTAGGTATTCCTCCCGA 49 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGAT 25157 |||||||| | ||||| ||||| ||||||||||||||| || Sbjct 48 TCAACAGCGATTAATTTTCGCCGGTAAACAATTAGAAGATAAT 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418800981046280