Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2732095 329 3e-85 seq2080903 116 4e-21 seq2033701 116 4e-21 seq1954097 114 1e-20 seq2157354 109 6e-19 seq1248858 87.8 2e-12 >seq2732095 Length=3591 Score = 329 bits (364), Expect = 3e-85 Identities = 550/786 (70%), Gaps = 8/786 (1%) Strand=Plus/Minus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 |||||| |||||||||||||| || || ||| | ||||||||||| || || || || || Sbjct 1785 CATAACTCCACATTTTTGGTACTCGCCTACTCTCTTTTCAAAGAAGTTGGTTTTACCCTC 1726 Query 92850 CAAAGATATCGAATTCACT--AGTGAT-TGGATTCTTGGCGTTATAATACTTTTCACCGA 92906 | |||||| | ||| | ||| | |||||||| || || ||| ||| |||| | Sbjct 1725 AAGAGATAT-GTTTTCCATGAAGTCAAATGGATTCTCTGCATTGTAAAGCTTATCACAGC 1667 Query 92907 TCAACTCGTACAATAAT-CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAA 92965 | ||| |||| || | ||| || |||||||| ||||| || ||| | | |||| Sbjct 1666 CTAGCTCC-ACAAGAAGACGATCTGCAACAAATTCAATGTATTGCCTCATAAGAACACAG 1608 Query 92966 TTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACG 93025 ||||| || | ||| ||||| ||||| || || ||||| |||| || ||| ||| Sbjct 1607 TTCATACCAATGAGATTGACAGGCAGAGCATCAGTTAAGAATTCTTGTTCAATTTTGACG 1548 Query 93026 GCTTCTTTCAAGATTTCTATTACTCTACTATTTGGT-GGTTTTTGTACGACATAATTGTA 93084 || || | | ||| || | || || | || || | ||| | || ||| | Sbjct 1547 GCATCATCAATGATAGACTGAACA-TGCTGTTGACTAGGCTTGTTTACCAAATGCTTGAA 1489 Query 93085 CATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAA 93144 ||| | || |||||||| || || | |||||| || | || || || |||||||| || Sbjct 1488 CATGAGACAGGCAAAGTCAGTGTGAAGACCTTCATCCCTGGAGATTAATTCATTGCTAAA 1429 Query 93145 TGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGa 93204 || | ||| || | ||| || ||||||||||||||||| || | |||||| ||| Sbjct 1428 GGTAAGACCAGGCATCAGGCCACGTTTCTTGAGCCAAAAGATCGCAGCAAAGGAACCGCT 1369 Query 93205 aaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATT 93264 || || ||||||||||| || ||||| || | |||||||| ||| || | || | | Sbjct 1368 GAAGAAAATACCTTCCACAGCAGCAAAGGCAATGATACGTTCAGCATAACTAGCAGTTTC 1309 Query 93265 ACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGAT 93324 | | |||||| | | |||||| || || || || || | |||||| | || || | Sbjct 1308 ATGGGCAATCCATCTCAGAGCCCAGTCAGCCTTCTTTTTGACACAAGGCAAGGTCTCAAC 1249 Query 93325 AGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGA 93384 || || || || || | | || || || |||| ||||| || | ||| | | | Sbjct 1248 GGCATTGAACAGTCTATTTTGTTCTTCAGAGTCTCTGATGTAGGTGTTGATGAGTAAACT 1189 Query 93385 ATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTC 93444 ||||||||| |||| ||| ||||||||||||||||| || || || ||||| ||||| Sbjct 1188 GTACATTTCACTGTGGATATTTTCCATTGCAATTTGGAAACCATAAAAGCATCTTGCTTC 1129 Query 93445 CGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGA 93504 | | || |||||||| | |||||||| || ||||||||||| || || ||||| || Sbjct 1128 TGGAACTTGAACTTCTTGGCAGAATCTCTCGACAAGATTTTCATTAACAATCCCATCAGA 1069 Query 93505 TGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATC 93564 || || ||||| |||| | ||| || |||||| |||| ||||| ||||| ||||| Sbjct 1068 AGCAGCGAAAAATGCCAGCACATGGGAAATGAAATGTCTCTCCTCATCCTTAAGTTTATC 1009 Query 93565 CCAATC 93570 ||| || Sbjct 1008 CCAGTC 1003 Score = 95.1 bits (104), Expect = 1e-14 Identities = 90/115 (78%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCC 93640 || || ||||| |||||||| ||||||||||| || ||| | ||||| |||||||| | Sbjct 171 TTAGACAGATCCACTTCTTCCACAGTCCAAAATGAAGCTACAGCTTTCTTGTACATCTTG 112 Query 93641 CATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTA 93695 | || |||||| | |||||||| || |||||||| || ||||| ||||||| Sbjct 111 AAGATATCTTGAAACTGAATTGGGAAAATGACAAATCGGGCTGGGTTGTCTTTTA 57 >seq2080903 Length=794 Score = 116 bits (128), Expect = 4e-21 Identities = 79/88 (90%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA- 126320 ||||||||||||||||||| |||||||||||||||||||||| |||||| | | | || Sbjct 409 TACAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTACTCGAGAGAG 468 Query 126321 -GCGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||||| Sbjct 469 TGCGTGGGTTCGAACCCCACACCTGACA 496 >seq2033701 Length=757 Score = 116 bits (128), Expect = 4e-21 Identities = 79/88 (90%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA- 126320 ||||||||||||||||||| |||||||||||||||||||||| |||||| | | | || Sbjct 520 TACAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTACTCGAGAGAG 579 Query 126321 -GCGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||||| Sbjct 580 TGCGTGGGTTCGAACCCCACACCTGACA 607 >seq1954097 Length=703 Score = 114 bits (126), Expect = 1e-20 Identities = 77/85 (91%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA--GC 126322 ||||||||||||||||||||||||||||||||||||||| |||||| | | | || || Sbjct 703 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTACTCGTGAGAGTGC 644 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 ||||||||||||||||||||||||| Sbjct 643 GTGGGTTCGAACCCCACACCTGACA 619 >seq2157354 Length=865 Score = 109 bits (120), Expect = 6e-19 Identities = 75/84 (89%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGT--TCCCTCGGGAGCG 126323 |||||||||||||||||||||||||||||||||||||| |||||| || | | ||| Sbjct 493 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGCTCTGGTACTCGTAAGAGTGCG 552 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||||||||| Sbjct 553 TGGGTTCGAACCCCACACCTGACA 576 >seq1248858 Length=460 Score = 87.8 bits (96), Expect = 2e-12 Identities = 62/70 (89%), Gaps = 2/70 (3%) Strand=Plus/Minus Query 126282 GGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAG--CGTGGGTTCGAACCCCAC 126339 |||||||||||||||||||||| |||||| | | | ||| |||||||||||||||||| Sbjct 460 GGTCTAAGGCGCCAGATTTAAGCTCTGGTACTCGAGAGAGTGCGTGGGTTCGAACCCCAC 401 Query 126340 ACCTGACAAA 126349 |||||||||| Sbjct 400 ACCTGACAAA 391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537713753938880