Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq2750648 105 5e-18 seq2732657 104 2e-17 >seq2750648 Length=12224 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 111182 TAAAAATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAAC 111241 ||| ||||||||| || || ||||| | || || || || ||||| | ||| ||| Sbjct 10818 TAATAATGCAAATATTCGTAAAAACACTCACTGGTAAGACAATTACTATAGAAGTAGAAT 10877 Query 111242 CCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCG 111301 | | || | | | | | ||||||||||| ||||||||||| |||| || Sbjct 10878 CGGGAGAGACAATAGAAAAACTTAAACAAAAAATACAAGACAAAGAAGGTATTCCTCCCG 10937 Query 111302 ATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATT 111361 ||||||| | | |||| || || |||||||| |||||| |||| ||| | |||| Sbjct 10938 ATCAACAGCGATTAATTTTCGCCGGTAAACAATTAGAAGATAATAAATGTATTACTGATT 10997 Query 111362 ATAATATACAAAAAGAATCTACACTACATTTAGTGTTG 111399 |||| || ||||||||||||||| | ||||| || ||| Sbjct 10998 ATAACATTCAAAAAGAATCTACAATTCATTTGGTTTTG 11035 >seq2732657 Length=3626 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||||||||||||||| | || || || ||||| || ||||| ||||| Sbjct 3373 ATGCAAATTTTTGTCAAAACCCTCACAGGAAAGACCATCACATTGGAAGTCGAACCTTCT 3314 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| | ||| | || || ||| ||| || || |||||| |||| || ||| Sbjct 3313 GATACCATTGAGAATGTGAAGGCAAAGATTCAGGATAAGGAAGGCATTCCACCAGACCAA 3254 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||| | |||| ||| ||||| || ||||||||| | || || | ||||| || Sbjct 3253 CAGAGGTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGTCGTACCTTGTCTGATTACAAC 3194 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || |||||||| ||||| ||||| ||| | || || | ||||| Sbjct 3193 ATCCAGAAAGAATCCACACTTCATTTGGTGCTTCGATTGAGAGGTGG 3147 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||||||||| || || | || || ||||| |||||| | ||| ||| || Sbjct 2461 ATGCAAATTTTTGTGAAGACCCTTACAGGAAAAACAATTACCCTAGAAGTGGAGCCTTCA 2402 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | ||||| ||| ||| ||||| ||||| | || || || Sbjct 2401 GACACCATTGAGAATGTAAAGGCAAAGATTCAAGACAAGGAAGGTATCCCTCCAGACCAG 2342 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||||| || | ||| ||||| || | |||||| | ||| || | || || ||| Sbjct 2341 CAGAGGCTGATCTTTGCAGGCAAGCAGCTTGAAGATGGTCGCACTCTGTCTGACTACAAT 2282 Query 111367 ATACAAAAAGAATCTACACTACATTTAGT 111395 || || || ||||||||||| |||||||| Sbjct 2281 ATTCAGAAGGAATCTACACTCCATTTAGT 2253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408857879070400