Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2732657 132 4e-26 seq2750648 129 5e-25 seq2442759 95.1 1e-14 seq2683473 82.4 6e-11 seq2129313 82.4 6e-11 >seq2732657 Length=3626 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| ||||| | || || || || |||| | ||||| ||| | | Sbjct 3373 ATGCAAATTTTTGTCAAAACCCTCACAGGAAAGACCATCACATTGGAAGTCGAACCTTCT 3314 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || | || ||| ||||| || ||||| || |||||||| || ||| Sbjct 3313 GATACCATTGAGAATGTGAAGGCAAAGATTCAGGATAAGGAAGGCATTCCACCAGACCAA 3254 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| ||||| ||||| || ||| || ||| | || ||||||||| Sbjct 3253 CAGAGGTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGTCGTACCTTGTCTGATTACAAC 3194 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || ||||||||||| | ||||| || | |||||| | || ||| Sbjct 3193 ATCCAGAAAGAATCCACACTTCATTTGGTGCTTCGATTGAGAGGTGGT 3146 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || || | || || ||||| | || || |||||||| | | Sbjct 2461 ATGCAAATTTTTGTGAAGACCCTTACAGGAAAAACAATTACCCTAGAAGTGGAGCCTTCA 2402 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || ||| |||||||||||||| ||||| || || || || Sbjct 2401 GACACCATTGAGAATGTAAAGGCAAAGATTCAAGACAAGGAAGGTATCCCTCCAGACCAG 2342 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||| ||| | || ||| ||||| | || || ||||| Sbjct 2341 CAGAGGCTGATCTTTGCAGGCAAGCAGCTTGAAGATGGTCGCACTCTGTCTGACTACAAT 2282 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 ||||| || ||||| || | ||||||||| Sbjct 2281 ATTCAGAAGGAATCTACACTCCATTTAGTT 2252 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| | || || || || |||| ||||| || ||| | | Sbjct 3145 ATGCAGATCTTTGTGAAAACCCTCACAGGAAAGACCATCACACTTGAGGTTGAACCATCA 3086 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || ||||| || || ||||| ||||| |||||||| || || || Sbjct 3085 GATACCATTGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCAG 3026 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || ||||| || ||||| | || ||| |||||| | || || |||||| Sbjct 3025 CAAAGGCTGATCTTTGCAGGTAAACAACTGGAAGATGGCCGCACATTGTCTGACTACAAC 2966 Query 22399 ATTCAAAAAGAATCCAC 22415 ||||| || ||||| || Sbjct 2965 ATTCAGAAGGAATCTAC 2949 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || ||||| | ||||| ||| || | Sbjct 2005 ATGCAGATCTTCGTGAAGACCCTCACTGGAAAGACCATCACTTTGGAAGTTGAACCCTCT 1946 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | ||| ||| || || ||||||||||| |||||||| ||||| Sbjct 1945 GACACAATTGAAAATGTAAAAGCAAAGATCCAGGACAAGGAGGGCATTCCACCAGATCAG 1886 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| ||||| ||| | || ||| || || | || ||||||||| Sbjct 1885 CAGAGACTGATCTTTGCAGGCAAGCAGCTGGAAGATGGGCGTACATTGTCAGATTACAAC 1826 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||| || ||||| ||| | ||||| || Sbjct 1825 ATTCAGAAGGAATCTACCCTTCATTTGGT 1797 Score = 105 bits (116), Expect = 5e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||||||||| | || || || || |||| | ||||| ||| | | Sbjct 2917 ATGCAGATATTTGTTAAAACCCTCACTGGAAAGACCATCACCTTGGAAGTAGAACCATCT 2858 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || ||||| || || ||||| ||||| |||||||| || || || Sbjct 2857 GACACCATTGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGTATTCCTCCAGACCAG 2798 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || ||||| || |||||| | || ||| |||||| | || || ||||| Sbjct 2797 CAGAGGCTGATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACATTGTCAGACTACAAT 2738 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || ||||| || | || || || | ||||| | || ||| Sbjct 2737 ATTCAGAAGGAATCTACTCTTCACTTGGTACTAAGATTGAGAGGTGGT 2690 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || | || ||||| || ||| | | Sbjct 3601 ATGCAGATCTTCGTCAAGACACTCACAGGAAAGACCATAACCCTTGAGGTAGAACCATCA 3542 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || || ||||| || || ||||| ||||| |||||||| || || ||| Sbjct 3541 GATACCATTGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGTATTCCTCCAGACCAA 3482 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | | || ||||| || || ||||| || ||| || || | || ||||||||| Sbjct 3481 CAGAGGTTGATCTTTGCTGGAAAGCAGTTGGAAGATGGTCGTACATTGTCTGATTACAAC 3422 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || ||||| || | || | || | |||||| | || ||| Sbjct 3421 ATTCAGAAGGAATCTACTCTTCACCTTGTACTCCGATTGAGAGGTGGT 3374 >seq2750648 Length=12224 Score = 129 bits (142), Expect = 5e-25 Identities = 164/224 (73%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 22213 GTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAA 22272 |||| |||||||| || || ||||| | || ||||| || | ||| | ||||| ||| Sbjct 10817 GTAATAATGCAAATATTCGTAAAAACACTCACTGGTAAGACAATTACTATAGAAGTAGAA 10876 Query 22273 ACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCC 22332 | || || | || | | ||||||||||| |||||||| || |||||||| ||| Sbjct 10877 TCGGGAGAGACAATAGAAAAACTTAAACAAAAAATACAAGACAAAGAAGGTATTCCTCCC 10936 Query 22333 GATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCT--CCG 22390 |||||||| || | || || ||||| ||||| ||||| ||| | | || | | | Sbjct 10937 GATCAACAGCGATTAATTTTCGCCGGTAAACAATTAGAAGATAA--TAAATGTATTACTG 10994 Query 22391 ATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGA 22434 |||| ||||||||||||||||| || || ||||| |||||| || Sbjct 10995 ATTATAACATTCAAAAAGAATCTACAATTCATTTGGTTTTGAGA 11038 >seq2442759 Length=1285 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || ||||| || || | || || || || | || ||||| || || | Sbjct 316 AACATGCAGATCTTTGTGAAGACACTCACTGGGAAGACCATTACCCTTGAGGTAGAGCCT 257 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || || | || ||| || ||||| |||||||| ||||||||||| Sbjct 256 TCAGACACCATCGAAAATGTAAAGGCAAAGATCCAAGATAAGGAGGGCATTCCACCCGAC 197 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | | || ||||| || || ||| | || ||| |||||| | || |||||| Sbjct 196 CAGCAGAGGTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGCACATTGTCAGATTAC 137 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||| || || ||||| || | ||||| || Sbjct 136 AACATCCAGAAGGAATCTACACTTCATTTGGT 105 >seq2683473 Length=2397 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 129739 TACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTA 129798 ||||| |||||||| | ||| | |||| | || ||||| ||||||| || ||| || Sbjct 1593 TACTCAACAATTTCTGTGCAGAGATTAGAACACTTGATGGTACCCAAATTCTGTTGGTTG 1652 Query 129799 CTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGAC 129851 || || | ||||| ||||||||||| | |||||| ||||| || ||||| || Sbjct 1653 CTCTTTCTATTGCATGCATCTTTGTATAGCATGTATGGCGTTCCAGTTTCCAC 1705 >seq2129313 Length=838 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 129739 TACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTA 129798 ||||| |||||||| | ||| | |||| | || ||||| ||||||| || ||| || Sbjct 802 TACTCAACAATTTCTGTGCAGAGATTAGAACACTTGATGGTACCCAAATTCTGTTGGTTG 743 Query 129799 CTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGAC 129851 || || | ||||| ||||||||||| | |||||| ||||| || ||||| || Sbjct 742 CTCTTTCTATTGCATGCATCTTTGTATAGCATGTATGGCGTTCCAGTTTCCAC 690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405656911560280