Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq2750648 136 3e-27 seq2732657 116 3e-21 seq2442759 96.9 3e-15 >seq2750648 Length=12224 Score = 136 bits (150), Expect = 3e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 114165 AGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGA 114224 ||||||||||| ||||| || |||||||||||||||||||| ||||| | ||| | Sbjct 11040 AGTCTCAAAACCAAATGAATTGTAGATTCTTTTTGAATGTTATAATCAGTAATACATTTA 10981 Query 114225 GAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCT 114284 |||||| | ||||||||| ||| | || | |||||||| || |||||||| |||||| Sbjct 10980 TTATCTTCTAATTGTTTACCGGCGAAAATTAATCGCTGTTGATCGGGAGGAATACCTTCT 10921 Query 114285 TTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTC 114344 ||||| || |||||||| || | ||| | || || ||||| || || | || Sbjct 10920 TTGTCTTGTATTTTTTGTTTAAGTTTTTCTATTGTCTCTCCCGATTCTACTTCTATAGTA 10861 Query 114345 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || || || || || |||||||| || || ||||| Sbjct 10860 ATTGTCTTACCAGTGAGTGTTTTTACGAATATTTGCAT 10823 >seq2732657 Length=3626 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 114156 CCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTC 114215 || ||||| ||||| | || ||||| | |||||||| || |||||||||||||| | Sbjct 1779 CCACCACGAAGTCTAAGGACCAAATGAAGGGTAGATTCCTTCTGAATGTTGTAATCTGAC 1838 Query 114216 ATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGA 114275 | ||||| |||||| || || || || || |||| || | ||| || || || ||| Sbjct 1839 AATGTACGCCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGTCTCTGCTGATCTGGTGGA 1898 Query 114276 ATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACG 114335 ||||| || ||||| |||||| ||||| | ||||| ||||| | || ||| || Sbjct 1899 ATGCCCTCCTTGTCCTGGATCTTTGCTTTTACATTTTCAATTGTGTCAGAGGGTTCAACT 1958 Query 114336 TCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||| || | || || || || || || || || || |||||||| Sbjct 1959 TCCAAAGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATCTGCAT 2005 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | | ||| | || || || | |||||||| || ||||| ||||| || Sbjct 2688 ATACCACCTCTCAATCTTAGTACCAAGTGAAGAGTAGATTCCTTCTGAATATTGTAGTCT 2747 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| || ||||||||||| |||| || | ||| ||||| ||| Sbjct 2748 GACAATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGA 2807 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| || || ||||| ||| | | ||||| |||||| | | ||| Sbjct 2808 GGAATACCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGTTCT 2867 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || || || || || ||||| ||||| |||||||| Sbjct 2868 ACTTCCAAGGTGATGGTCTTTCCAGTGAGGGTTTTAACAAATATCTGCAT 2917 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || ||||| | || |||||||| || ||||||||||| || |||||| |||||| Sbjct 3165 ACCAAATGAAGTGTGGATTCTTTCTGGATGTTGTAATCAGACAAGGTACGACCATCTTCC 3224 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 | || || ||||| | || | | ||||||||| || ||||||||||| || || | Sbjct 3225 AACTGCTTGCCAGCAAAAATCAACCTCTGTTGGTCTGGTGGAATGCCTTCCTTATCCTGA 3284 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 |||||| || | | |||| ||| || | | |||||| |||| || | || || Sbjct 3285 ATCTTTGCCTTCACATTCTCAATGGTATCAGAAGGTTCGACTTCCAATGTGATGGTCTTT 3344 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || || ||||| |||||||| ||||| Sbjct 3345 CCTGTGAGGGTTTTGACAAAAATTTGCAT 3373 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 |||||||| || |||||||||||||| || |||||| |||||| | || || ||| Sbjct 3405 GTAGATTCCTTCTGAATGTTGTAATCAGACAATGTACGACCATCTTCCAACTGCTTTCCA 3464 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||||||||| |||||||| ||||| || || ||||| ||| Sbjct 3465 GCAAAGATCAACCTCTGTTGGTCTGGAGGAATACCTTCCTTATCTTGGATCTTAGCTTTG 3524 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| ||| || | | ||| || || | ||| | || || || || || || Sbjct 3525 ACATTTTCAATGGTATCTGATGGTTCTACCTCAAGGGTTATGGTCTTTCCTGTGAGTGTC 3584 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 3585 TTGACGAAGATCTGCAT 3601 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 |||||||| || ||||||||||| || || || || |||||| ||||||||||| Sbjct 2949 GTAGATTCCTTCTGAATGTTGTAGTCAGACAATGTGCGGCCATCTTCCAGTTGTTTACCT 3008 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | || ||||| || ||||| ||||| || || ||||| ||| Sbjct 3009 GCAAAGATCAGCCTTTGCTGGTCTGGGGGAATACCTTCCTTATCTTGGATCTTAGCTTTG 3068 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||||| ||| || | | ||| || || | || | || || || || || ||| Sbjct 3069 ACATTTTCAATGGTATCTGATGGTTCAACCTCAAGTGTGATGGTCTTTCCTGTGAGGGTT 3128 Query 114366 TTTACAAAAATCTGCAT 114382 || ||||| |||||||| Sbjct 3129 TTCACAAAGATCTGCAT 3145 >seq2442759 Length=1285 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | || ||| | || ||||| | |||||||| || || ||||||||||| Sbjct 84 ATACCACCTCTTAATCTAAGGACCAAATGAAGTGTAGATTCCTTCTGGATGTTGTAATCT 143 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || |||||| || || || ||||| |||| | | ||| ||||| || Sbjct 144 GACAATGTGCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCGGGT 203 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || || || |||||| |||| | ||| | |||||| | | || Sbjct 204 GGAATGCCCTCCTTATCTTGGATCTTTGCCTTTACATTTTCGATGGTGTCTGAAGGCTCT 263 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | || || || || || || || ||||| ||||||||| Sbjct 264 ACCTCAAGGGTAATGGTCTTCCCAGTGAGTGTCTTCACAAAGATCTGCATG 314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406049687283744