Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq2732657 98.7 8e-16 seq924377 98.7 8e-16 >seq2732657 Length=3626 Score = 98.7 bits (108), Expect = 8e-16 Identities = 161/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| ||||||| || ||||||| |||||| ||| || ||||| ||||||||||| | Sbjct 3146 ACCACCTCTCAATCGAAGCACCAAATGAAGTGTGGATTCTTTCTGGATGTTGTAATCAGA 3205 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 ||| || | || ||||| |||||||| ||||| |||| | ||| || || || Sbjct 3206 CAAGGTACGACCATCTTCCAACTGCTTGCCAGCAAAAATCAACCTCTGTTGGTCTGGTGG 3265 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACA---CTATCAGTAGATTC 34076 | || || || ||| ||| ||| ||| | | || || |||||| || ||| Sbjct 3266 AATGCCTTCCTTATCCTGAATCTTTGCCTTCA---CATTCTCAATGGTATCAGAAGGTTC 3322 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | ||| | || || || ||||| || || ||||| ||||| |||||||| Sbjct 3323 GACTTCCAATGTGATGGTCTTTCCTGTGAGGGTTTTGACAAAAATTTGCAT 3373 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 33916 AGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGCTCGTCG 33975 || |||| |||||| || |||||||||||||||||||||| |||| ||| | || Sbjct 1794 AGGACCAAATGAAGGGTAGATTCCTTCTGAATGTTGTAATCTGACAATGTACGCCCATCT 1853 Query 33976 TCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCTTTGTCC 34035 |||| |||||||| ||||| ||||| | ||||||||| || | || ||| |||||| Sbjct 1854 TCCAGCTGCTTGCCTGCAAAGATCAGTCTCTGCTGATCTGGTGGAATGCCCTCCTTGTCC 1913 Query 34036 ATAATTTTTTGCTTAATGGAACTCACA---CTATCAGTAGATTCGCATTCGACCGTTATT 34092 | | ||||||| | | | || | |||| | ||| ||| | || || Sbjct 1914 -TGGATCTTTGCTT--TTACATTTTCAATTGTGTCAGAGGGTTCAACTTCCAAAGTGATG 1970 Query 34093 GTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || ||||| || || || ||||| ||||| ||||| Sbjct 1971 GTCTTTCCAGTGAGGGTCTTCACGAAGATCTGCAT 2005 >seq924377 Length=407 Score = 98.7 bits (108), Expect = 8e-16 Identities = 82/98 (84%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| ||||||||||| |||| |||||||||||| ||| |||| |||||||| Sbjct 258 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAGTAAGGTACGATCCAAGGAACC 317 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 114429 | ||||||| || ||||||||||| ||| ||| ||||| Sbjct 318 ATAACTGATTTAATGAGCCATTCGCGGTTTCGCCTTAA 355 Score = 98.7 bits (108), Expect = 8e-16 Identities = 82/98 (84%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| ||||||||||| |||| |||||||||||| ||| |||| |||||||| Sbjct 258 CATGTATTAGCTCTAGAATTGCCACAGTTATCCAAGTAGTAAGGTACGATCCAAGGAACC 317 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATCGTCTTAA 115626 | ||||||| || ||||||||||| ||| ||| ||||| Sbjct 318 ATAACTGATTTAATGAGCCATTCGCGGTTTCGCCTTAA 355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 383751159991024