Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2750648 105 2e-17 seq2732657 105 2e-17 seq642385 104 5e-17 >seq2750648 Length=12224 Score = 105 bits (116), Expect = 2e-17 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 288319 TCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTA 288378 |||||||||||||| || ||||| || | ||||||||| || || |||||||| Sbjct 10977 TCTTCTAATTGTTTACCGGCGAAAATTAATCGCTGTTGATCGGGAGGAATACCTTCTTTG 10918 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 || || ||||| ||| | |||||||| | || | |||||||||||| | || || Sbjct 10917 TCTTGTATTTTTTGTTTAAGTTTTTCTATTGTCTCTCCCGATTCTACTTCTATAGTAATT 10858 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 ||||| || || || || || |||||||| |||||||| Sbjct 10857 GTCTTACCAGTGAGTGTTTTTACGAATATTTGCATTAT 10820 >seq2732657 Length=3626 Score = 105 bits (116), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | | ||| ||||| | |||| || ||| || || ||||| ||||| | Sbjct 2691 CCACCTCTCAATCTTAGTACCAAGTGAAGAGTAGATTCCTTCTGAATATTGTAGTCTGAC 2750 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || ||||| | ||||| || || |||||||| | ||| || ||||| Sbjct 2751 AATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAGCCTCTGCTGG---TCTGGA 2807 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 || ||||| ||||| ||||| || ||||| || ||||| || | || | |||| Sbjct 2808 GGAATACCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGTTCT 2867 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||||| ||||| || || || || || || ||||||||||| Sbjct 2868 ACTTCCAAGGTGATGGTCTTTCCAGTGAGGGTTTTAACAAATATCTGCAT 2917 Score = 105 bits (116), Expect = 2e-17 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 288262 AGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCT 288321 ||||| || |||| || ||| || || || || || || | | || || || ||| Sbjct 3390 AGTACAAGGTGAAGAGTAGATTCCTTCTGAATGTTGTAATCAGACAATGTACGACCATCT 3449 Query 288322 TCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTA 288378 || || || ||||| || ||||||| | |||||| ||||| || ||||| ||| Sbjct 3450 TCCAACTGCTTTCCAGCAAAGATCAACCTCTGTTGG---TCTGGAGGAATACCTTCCTTA 3506 Query 288379 TCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATC 288438 || ||||| || ||||| || ||||| || | ||| | |||||| || || || || Sbjct 3507 TCTTGGATCTTAGCTTTGACATTTTCAATGGTATCTGATGGTTCTACCTCAAGGGTTATG 3566 Query 288439 GTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || || || ||||||||||| |||||||| Sbjct 3567 GTCTTTCCTGTGAGTGTCTTGACGAAGATCTGCAT 3601 >seq642385 Length=370 Score = 104 bits (114), Expect = 5e-17 Identities = 164/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | | |||||| || | ||| | || ||| || ||||| || ||||| | Sbjct 40 CCACCTCTTAATCTAAGGACCAAATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCTGAC 99 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| || ||||| | || ||||| || ||||||| | |||||| |||||| Sbjct 100 AATGTGCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGTTGG---TCTGGG 156 Query 288367 ---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC-GCTCGATTC 288422 || ||||| ||||| ||||| || || ||||| |||| || || || | | ||| | Sbjct 157 GGGATCCCTTCCTTATCTTGGATCTTGGCCTTCACAATTTCAATTGAGTCTGATGGAT-C 215 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | | | ||||| | ||||| || || || ||||||||||| |||||||| Sbjct 216 TCGTACAAGCGTAAGGGTCTTTCCTGTTAGTGTCTTGACGAAGATCTGCAT 266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1138079253102736