Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq2732657 136 4e-27 seq2750648 118 1e-21 seq2442759 111 2e-19 seq1400646 87.8 2e-12 >seq2732657 Length=3626 Score = 136 bits (150), Expect = 4e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | ||||| |||||| | ||||| || |||||||| || ||||||||||| | Sbjct 3146 ACCACCTCTCAATCGAAGCACCAAATGAAGTGTGGATTCTTTCTGGATGTTGTAATCAGA 3205 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || | ||||| | ||||||||| ||| |||| | || ||| ||||| || || Sbjct 3206 CAAGGTACGACCATCTTCCAACTGCTTGCCAGCAAAAATCAACCTCTGTTGGTCTGGTGG 3265 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || || || || ||| ||| ||| ||| | |||||| | || || Sbjct 3266 AATGCCTTCCTTATCCTGAATCTTTGCCTTCACATTCTCAATGGTATCAGAAGGTTCGAC 3325 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | |||||| || || | ||||| || ||||||||||| Sbjct 3326 TTCCAATGTGATGGTCTTTCCTGTGAGGGTTTTGACAAAAATTTGCAT 3373 Score = 127 bits (140), Expect = 2e-24 Identities = 157/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 64229 CTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCG 64288 ||||| |||| ||| | || ||||| || ||||| ||||| || | | ||||| | Sbjct 2247 CTAAGAACTAAATGGAGTGTAGATTCCTTCTGAATATTGTAGTCAGACAGAGTGCGACCA 2306 Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 ||||||||||||||||| ||| | || |||| ||||||||| ||||| || ||||| || Sbjct 2307 TCTTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGAGGGATACCTTCCTTG 2366 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 ||||| || ||| ||||||| ||| | || || | |||||||||| || | Sbjct 2367 TCTTGAATCTTTGCCTTTACATTCTCAATGGTGTCTGAAGGCTCCACTTCTAGGGTAATT 2426 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || || | || || || ||||||||||| Sbjct 2427 GTTTTTCCTGTAAGGGTCTTCACAAAAATTTGCAT 2461 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || || || | |||||| || | ||||| || ||||| || |||||||||||||||| Sbjct 1779 CCACCACGAAGTCTAAGGACCAAATGAAGGGTAGATTCCTTCTGAATGTTGTAATCTGAC 1838 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || ||| | ||||| ||||||||||| ||| | || || | |||||| || || ||| Sbjct 1839 AATGTACGCCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGTCTCTGCTGATCTGGTGGA 1898 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 || || || || || || || ||| |||||| || | ||| ||| || || ||| Sbjct 1899 ATGCCCTCCTTGTCCTGGATCTTTGCTTTTACATTTTCAATTGTGTCAGAGGGTTCAACT 1958 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | ||| | |||||| || || | || || ||||| || ||||| Sbjct 1959 TCCAAAGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATCTGCAT 2005 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || | ||||| || || || |||| || ||||| || |||||||||||||| | Sbjct 3374 ACCACCTCTCAATCGGAGTACAAGGTGAAGAGTAGATTCCTTCTGAATGTTGTAATCAGA 3433 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | ||||| | |||||| || ||| | || | || ||| ||||| ||||| Sbjct 3434 CAATGTACGACCATCTTCCAACTGCTTTCCAGCAAAGATCAACCTCTGTTGGTCTGGAGG 3493 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 ||| ||||| || ||||| | | || ||||| ||| || | ||||| | || | Sbjct 3494 AATACCTTCCTTATCTTGGA-TCTTAGCTTTGACATTTTCAATGGTATCTGATGGTTCTA 3552 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | |||| |||||| || || | || || ||||| || ||||| Sbjct 3553 CCTCAAGGGTTATGGTCTTTCCTGTGAGTGTCTTGACGAAGATCTGCAT 3601 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || ||||| || ||||||||||| || | | ||||| | ||| Sbjct 2934 AGTACAAGGTGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGACAATGTGCGGCCATCT 2993 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || || || || || ||| | || |||| |||||||| || ||||| ||||| || ||| Sbjct 2994 TCCAGTTGTTTACCTGCAAAGATCAGCCTTTGCTGGTCTGGGGGAATACCTTCCTTATCT 3053 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | || ||||| ||| || | ||||| | || || || | || | ||| Sbjct 3054 TGGA-TCTTAGCTTTGACATTTTCAATGGTATCTGATGGTTCAACCTCAAGTGTGATGGT 3112 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || || | ||||| || || || ||||| Sbjct 3113 CTTTCCTGTGAGGGTTTTCACAAAGATCTGCAT 3145 >seq2750648 Length=12224 Score = 118 bits (130), Expect = 1e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 64240 ATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTG 64299 |||||| || ||||||||||||||||| ||||| | | ||||| | || Sbjct 11026 ATGAATTGTAGATTCTTTTTGAATGTTATAATCAGTAATACATTTATTATCTTCTAATTG 10967 Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 || ||||| |||| | ||||| || ||||||||||| |||||||| ||||||||||| Sbjct 10966 TTTACCGGCGAAAATTAATCGCTGTTGATCGGGAGGAATACCTTCTTTGTCTTGTATTTT 10907 Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||| || | || | ||| || || | || ||||||| ||| | ||||| || || Sbjct 10906 TTGTTTAAGTTTTTCTATTGTCTCTCCCGATTCTACTTCTATAGTAATTGTCTTACCAGT 10847 Query 64420 CAAAGTTTTTACGAAAATTTGCATT 64444 | ||||||||||| ||||||||| Sbjct 10846 GAGTGTTTTTACGAATATTTGCATT 10822 >seq2442759 Length=1285 Score = 111 bits (122), Expect = 2e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 64226 AATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGC 64285 |||||||| || | ||||| || ||||| || || ||||||||||||| | ||||| Sbjct 96 AATCTAAGGACCAAATGAAGTGTAGATTCCTTCTGGATGTTGTAATCTGACAATGTGCGG 155 Query 64286 GCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCT 64345 | ||||| |||||||| || ||| | || | || |||||||||||| ||||| || || Sbjct 156 CCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCGGGTGGAATGCCCTCC 215 Query 64346 TTTTCTTGTATTTTTTGCTTTACA 64369 || ||||| || ||| ||||||| Sbjct 216 TTATCTTGGATCTTTGCCTTTACA 239 >seq1400646 Length=492 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 64289 TCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTT 64348 ||||| | || || ||||| |||| | ||||| || ||||||||||| ||| |||| Sbjct 10 TCTTCTAATTGTTTACCGGCGAAAATTAATCGCTGTTGATCGGGAGGAATACCTACTTTG 69 Query 64349 TCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACG 64408 |||||||||| ||| || | || | | | | || || || ||||||| | | | Sbjct 70 TCTTGTATTTGTTGTTTAAGTTTTTCTATTTTCTTTCCCGCTTCTACTTCTATATTAATT 129 Query 64409 GTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||||| || || | ||||||||||| ||||||||| Sbjct 130 GTCTTACCAGTGAGTGTTTTTACGAATATTTGCATT 165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482465063161280