Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq2750648 132 3e-26 seq2732657 129 4e-25 seq2442759 111 1e-19 >seq2750648 Length=12224 Score = 132 bits (146), Expect = 3e-26 Identities = 169/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 14944 TGTCTGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAA 15003 ||| | || |||| | ||| ||||| ||||||| ||||| |||||||| ||||| ||| Sbjct 11055 TGTATCCCCCCTCTAAGTCTCAAAACCAAATGAATTGTAGATTCTTTTTGAATGTTATAA 10996 Query 15004 TCGCTGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCG 15063 || | | | | | |||||||||||||| || ||| | || || |||||||| ||| Sbjct 10995 TCAGTAATACATTTATTATCTTCTAATTGTTTACCGGCGAAAATTAATCGCTGTTGATCG 10936 Query 15064 TTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTT 15123 ||||| ||||| ||||| ||||| ||| | ||||||| || || | | Sbjct 10935 GGAGGAATACCTTCTTTGTCTTGTATTTTTTGTTTAAGTTTTTCTATTGTCTCTCCCGAT 10876 Query 15124 TCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 ||||| |||| ||||| || ||||| || || |||||||| || |||||||| Sbjct 10875 TCTACTTCTATAGTAATTGTCTTACCAGTGAGTGTTTTTACGAATATTTGCAT 10823 >seq2732657 Length=3626 Score = 129 bits (142), Expect = 4e-25 Identities = 170/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||||| | || |||||||| || || ||||| || ||||||||||| | Sbjct 3147 CCACCTCTCAATCGAAGCACCAAATGAAGTGTGGATTCTTTCTGGATGTTGTAATCA--G 3204 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | || || | ||||| || || |||||||| | ||||| | ||||||||| || Sbjct 3205 ACAAGGTACGACCATCTTCCAACTGCTTGCCAGCAAAAATCAACCTCTGTTGGTCTGGTG 3264 Query 15068 GAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 |||| |||||||| || ||| ||||| || ||| | || || ||||| | ||| Sbjct 3265 GAATGCCTTCCTTATCCTGAATCTTTGCCTTC-ACATTCTCAATGGTATCAGAAGGTTCG 3323 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || ||||| || ||||| || ||||| ||||||||||||||| Sbjct 3324 ACTTCCAATGTGATGGTCTTTCCTGTGAGGGTTTTGACAAAAATTTGCATA 3374 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| | || | ||||||||| || ||||| || || || || ||||| || Sbjct 2235 CCACCTCTAAGCCTAAGAACTAAATGGAGTGTAGATTCCTTCTGAATATTGTAGTCAGAC 2294 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | ||||| | || ||||| || | |||| | ||| ||||| || Sbjct 2295 AGAGTGCGACCATCTTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGAGGG 2354 Query 15070 ATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTAC 15128 || ||||||||||| ||| ||||| |||||| | || || || || | || || Sbjct 2355 ATACCTTCCTTGTCTTGAATCTTTGC-CTTTACATTCTCAATGGTGTCTGAAGGCTCCAC 2413 Query 15129 GTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 |||| |||||| ||||| ||||| || || || ||||||||||||||| Sbjct 2414 TTCTAGGGTAATTGTTTTTCCTGTAAGGGTCTTCACAAAAATTTGCATA 2462 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||||| | || | ||||| ||||| || || || |||||||||| | | Sbjct 3375 CCACCTCTCAATCGGAGTACAAGGTGAAGAGTAGATTCCTTCTGAATGTTGTAAT--CAG 3432 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| || | ||||| || || || ||||| | ||||| | ||||||||| | Sbjct 3433 ACAATGTACGACCATCTTCCAACTGCTTTCCAGCAAAGATCAACCTCTGTTGGTCTGGAG 3492 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 |||| |||||||| || || || ||| ||| |||| || ||||| ||||| Sbjct 3493 GAATACCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCAATGGTATCTGATGGTTCTA 3552 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | ||| ||||| || ||||| || || || || || || |||||| Sbjct 3553 CCTCAAGGGTTATGGTCTTTCCTGTGAGTGTCTTGACGAAGATCTGCATA 3602 Score = 95.1 bits (104), Expect = 8e-15 Identities = 163/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 14949 GCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCT 15008 |||||| || | ||| | || |||||||||||||| || || || |||||||||| || Sbjct 1778 GCCACCACGAAGTCTAAGGACCAAATGAAGGGTAGATTCCTTCTGAATGTTGTAAT--CT 1835 Query 15009 GAGAA--TTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTT 15066 || || | | | | ||||| | || ||||| || | |||| | ||| || || | Sbjct 1836 GACAATGTACGCCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGTCTCTGCTGATCTGGT 1895 Query 15067 GGAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 ||||| || |||||||| || ||||| ||||||| |||| || || || ||| Sbjct 1896 GGAATGCCCTCCTTGTCCTGGATCTTTGC-TTTTACATTTTCAATTGTGTCAGAGGGTTC 1954 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || ||||| || || || || || || || || || |||||| Sbjct 1955 AACTTCCAAAGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATCTGCATA 2006 >seq2442759 Length=1285 Score = 111 bits (122), Expect = 1e-19 Identities = 167/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||||| ||||| | || |||||||| ||||| || || || |||||||||| ||| Sbjct 87 CCACCTCTTAATCTAAGGACCAAATGAAGTGTAGATTCCTTCTGGATGTTGTAAT--CTG 144 Query 15010 AGAATTCTCG--CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| || | ||||| | || || ||||| | ||||| | ||| |||||| || Sbjct 145 ACAATGTGCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCGGGTG 204 Query 15068 GAATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCT 15126 |||| || ||||| || || ||||| |||||| |||| || || || | ||| Sbjct 205 GAATGCCCTCCTTATCTTGGATCTTTGC-CTTTACATTTTCGATGGTGTCTGAAGGCTCT 263 Query 15127 ACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || || | ||||||||| || || || || || || ||||| || ||||| || Sbjct 264 ACCTCAAGGGTAATGGTCTTCCCAGTGAGTGTCTTCACAAAGATCTGCATGTT 316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 345410682480920