Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2442759 123 2e-23 seq2732657 102 7e-17 seq2732095 100 3e-16 seq2750648 95.1 1e-14 >seq2442759 Length=1285 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | ||||| | |||||||| | ||||| || || || || |||||||| | Sbjct 87 CCACCTCTTAATCTAAGGACCAAATGAAGTGTAGATTCCTTCTGGATGTTGTAATCTGAC 146 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| |||||||| ||||||| | |||||| ||||| || Sbjct 147 AATGTGCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCGGGTGGA 206 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 ||||||||||| || ||| || ||| | | ||||| |||||| | | ||| || Sbjct 207 ATGCCCTCCTTATCTTGGATCTTTGCCTTTACATTTTCGATGGTGTCTGAAGGCTCTACC 266 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || | ||| | || || || || || || || ||||| ||||||||| Sbjct 267 TCAAGGGTAATGGTCTTCCCAGTGAGTGTCTTCACAAAGATCTGCATG 314 >seq2732657 Length=3626 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 || ||||| | ||||| || || ||||||||||| || || |||||| ||| || Sbjct 2253 ACTAAATGGAGTGTAGATTCCTTCTGAATATTGTAGTCAGACAGAGTGCGACCATCTTCA 2312 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| || || || |||||| | |||||| || ||||| || || ||||||| | || Sbjct 2313 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGAGGGATACCTTCCTTGT-CTTG 2371 Query 127025 ATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 | | | || ||| | | || | |||||| | | ||| ||||| | ||| | ||||| Sbjct 2372 AATCTTTGCCTTTACATTCTCAATGGTGTCTGAAGGCTCCACTTCTAGGGTAATTGTTTT 2431 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || || |||||||| ||||| Sbjct 2432 TCCTGTAAGGGTCTTCACAAAAATTTGCAT 2461 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| | |||| | ||||| || | ||||| || || ||||||||||| || | Sbjct 2691 CCACCTCTCAATCTTAGTACCAAGTGAAGAGTAGATTCCTTCTGAATATTGTAGTCTGAC 2750 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || |||||||| ||||| |||||| | |||||| || ||||| Sbjct 2751 AATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 2810 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||| || ||| || |||| | ||| | |||||| | || ||| Sbjct 2811 ATACCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGTTCTACT 2870 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || || || || || ||||| ||||| |||||||| Sbjct 2871 TCCAAGGTGATGGTCTTTCCAGTGAGGGTTTTAACAAATATCTGCAT 2917 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | |||||||| | ||||| || || ||||| |||||||| | Sbjct 1779 CCACCACGAAGTCTAAGGACCAAATGAAGGGTAGATTCCTTCTGAATGTTGTAATCTGAC 1838 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| || || || |||||| || ||||||||| || || Sbjct 1839 AATGTACGCCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGTCTCTGCTGATCTGGTGGA 1898 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||||||| ||| || ||| || | | ||| | ||||| | || || Sbjct 1899 ATGCCCTCCTTGTCCTGGATCTT-TGCTTTTACATTTTCAATTGTGTCAGAGGGTTCAAC 1957 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || || || || || || || || || |||||||| Sbjct 1958 TTCCAAAGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATCTGCAT 2005 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 || ||||| | ||| ||||| || || ||||||||||| || || ||| ||| || Sbjct 2481 ACTAAATGGAGCGTGGACTCCTTCTGGATATTGTAATCAGACAATGTACGACCATCTTCC 2540 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| || ||||| | ||||| | ||| ||||| ||||| ||||| ||||| || | Sbjct 2541 AGCTGCTTACCAGCAAAAATCAACCTCTGTTGATCAGGAGGGATGCCTTCCTTATCTTGG 2600 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || || | | ||| | || || | ||| || || | || | ||||| Sbjct 2601 ATCTTAGTTTTAACATTTTCAATAGTATCAGATGGCTCAACCTCAAGTGTTATGGTTTTT 2660 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || ||||| ||||| |||||||| Sbjct 2661 CCTGTGAGGGTTTTCACAAAGATCTGCAT 2689 >seq2732095 Length=3591 Score = 100 bits (110), Expect = 3e-16 Identities = 391/610 (64%), Gaps = 25/610 (4%) Strand=Plus/Plus Query 46980 ATCCACACGGAAATGTACAACCTTCTCATACACGCCCTCATCAAAGACGAAGAGAAGCAA 47039 ||||||| |||||||||| | ||||| || || ||||| |||| || | ||| Sbjct 1171 ATCCACAGTGAAATGTACAGTTTACTCATCAACACCTACATCAGAGACTCTGAAGAACAA 1230 Query 47040 GCGACGCTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCC 47099 | || || || | | |||| | |||| || || | ||||| || ||||| Sbjct 1231 AATAGACTGTTCAATGCCGTTGAGACCTTGCCTTGTGTCAAAAAGAAGGCTGACTGGGCT 1290 Query 47100 ATGAAGTACATTGAAAACGAAAACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCATC 47159 ||| | |||| | |||| | | | || |||||| | || || || || Sbjct 1291 CTGAGATGGATTGCCCATGAAACTGCTAGTTATGCTGAACGTATCATTGCCTTTGCTGCT 1350 Query 47160 GTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGA 47219 || || || | |||||| || |||||| ||||| |||| | || | || Sbjct 1351 GTGGAAGGTATTTTCTTCAGCGGTTCCTTTGCTGCGATCTTTTGGCTCAAGAAACGTGGC 1410 Query 47220 GTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACC 47279 | ||||| || || || |||||||| || ||||||| || || ||||| || ||||| Sbjct 1411 CTGATGCCTGGTCTTACCTTTAGCAATGAATTAATCTCCAGGGATGAAGGTCTTCACACT 1470 Query 47280 AACTTTGCCTGTCTCTACTACAA-CACTAG-------AGTCGA-TCAAAAGTTGGACGTG 47330 |||||||||||||| | ||| || | | || | | |||| || | || Sbjct 1471 GACTTTGCCTGTCTCATGTTCAAGCATTTGGTAAACAAGCCTAGTCAACAG-----CATG 1525 Query 47331 CCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAG 47390 || ||| || ||| || |||||| ||||| || || || | || Sbjct 1526 TTCA--GTCT-----ATCATTGATGATGCCGTCAAAATTGAACAAGAATTCTTAACTGAT 1578 Query 47391 GCTCTGCCCG--AATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAAT 47448 |||||||| | ||||| | || |||||| | | ||||| | ||||| |||| Sbjct 1579 GCTCTGCCTGTCAATCTCA--TTGGTATGAACTGTGTTCTTATGAGGCAATACATTGAAT 1636 Query 47449 TTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATC 47508 |||| || || || || || || ||||| | | ||| ||||| | | ||||||| Sbjct 1637 TTGTTGCAGATCGTCTTCTTGTGGAGCTAGGCTGTGATAAGCTTTACAATGCAGAGAATC 1696 Query 47509 CATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCG 47568 |||| || || ||| | ||||| || || ||||| || |||||||| || || ||| | | Sbjct 1697 CATTTGACTTCATGGAAAACATATCTCTTGAGGGTAAAACCAACTTCTTTGAAAAGAGAG 1756 Query 47569 TCGGCGAATA 47578 | ||||| || Sbjct 1757 TAGGCGAGTA 1766 >seq2750648 Length=12224 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 126898 TCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGA 126957 || ||| |||||||| || ||||| ||||||||||| || ||||| || | Sbjct 11038 TCTCAAAACCAAATGAATTGTAGATTCTTTTTGAATGTTATAATCAGTAATACATTTATT 10979 Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017 ||| |||| ||||| || ||| | || |||||||| ||||||||||| || || || || Sbjct 10978 ATCTTCTAATTGTTTACCGGCGAAAATTAATCGCTGTTGATCGGGAGGAATACCTTCTTT 10919 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGG--TGTCCGTACTCTCGACTTCGACGGTC 127075 ||| ||||| || || |||| ||| | | | ||| | ||| ||||| | || Sbjct 10918 GTCTTGTATTTTTTGTTTAAGTTTTTCTATTGTCTCTCCCGATTCT--ACTTCTATAGTA 10861 Query 127076 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || || || || || |||||||| || || ||||| Sbjct 10860 ATTGTCTTACCAGTGAGTGTTTTTACGAATATTTGCAT 10823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 459151228042880