Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2750648 125 6e-24 seq2732657 98.7 9e-16 seq2524797 82.4 7e-11 >seq2750648 Length=12224 Score = 125 bits (138), Expect = 6e-24 Identities = 173/241 (72%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 45102 TTTTA--TTTTATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGA 45159 ||||| || ||| || || | || ||||| || | ||| | || ||||| ||||| | Sbjct 11063 TTTTAAGTTGTATCCCCCCTCTAAGTCTCAAAACCAAATGAATTGTAGATTCTTTTTGAA 11004 Query 45160 TATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTT 45219 | |||||||| | | |||| ||| || |||||||| || ||| | || ||||| | Sbjct 11003 TGTTATAATCAGTAATACATTTATTATCTTCTAATTGTTTACCGGCGAAAATTAATCGCT 10944 Query 45220 GCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGT 45279 | || || || ||||| |||||||| ||||| ||||||||||| | ||||| || | Sbjct 10943 GTTGATCGGGAGGAATACCTTCTTTGTCTTGTATTTTTTGTTTAAGTTTTTCTATTGTCT 10884 Query 45280 CGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCA 45339 | || || ||||| | ||||| || || || || || |||||||| || ||||||| Sbjct 10883 CTCCCGATTCTACTTCTATAGTAATTGTCTTACCAGTGAGTGTTTTTACGAATATTTGCA 10824 Query 45340 T 45340 | Sbjct 10823 T 10823 >seq2732657 Length=3626 Score = 98.7 bits (108), Expect = 9e-16 Identities = 155/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 45123 AGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTA 45182 ||||| | |||| ||| || || |||||||| || ||||| || || ||| | | Sbjct 2244 AGCCTAAGAACTAAATGGAGTGTAGATTCCTTCTGAATATTGTAGTCA--GACAGAGTGC 2301 Query 45183 GA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTT 45240 || ||| || | || || ||||| | |||| | |||||||| || || || |||| Sbjct 2302 GACCATCTTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGAGGGATACCTT 2361 Query 45241 CTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAG 45300 | || |||||||| ||| || | || | |||||| |||| ||| ||||| || | Sbjct 2362 CCTTGTCTTGAATCTTTGCCTTTACATTCTCAATGGTGTCTGAAGGCTCCACTTCTAGGG 2421 Query 45301 TAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| || || || || || |||||||||||||| Sbjct 2422 TAATTGTTTTTCCTGTAAGGGTCTTCACAAAAATTTGCAT 2461 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| | ||| || || ||||| || ||||| || ||||| | ||| | ||| || Sbjct 3164 CACCAAATGAAGTGTGGATTCTTTCTGGATGTTGTAATCAGACAAGGTACGACCATCTTC 3223 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 ||| || || || || | ||||| | || ||||| || ||||||||||| ||||| || Sbjct 3224 CAACTGCTTGCCAGCAAAAATCAACCTCTGTTGGTCTGGTGGAATGCCTTCCTTATCCTG 3283 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 ||| ||| || | || | ||| || |||| |||||||| | || | || || Sbjct 3284 AATCTTTGCCTTCACATTCTCAATGGTATCAGAAGGTTCGACTTCCAATGTGATGGTCTT 3343 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||| |||||||||||||| Sbjct 3344 TCCTGTGAGGGTTTTGACAAAAATTTGCAT 3373 >seq2524797 Length=1488 Score = 82.4 bits (90), Expect = 7e-11 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 124599 GGACTCAAAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTT 124658 || || || || || ||||||||| | ||||| ||||| || ||| |||||||||||||| Sbjct 573 GGTCTGAAGACAGGAATGTATTACCTGAGAACAAAACCTGCAGCCAATGCCATTCAATTT 632 Query 124659 ACCGTCGACAAATCTAAACT 124678 || |||||||| || ||||| Sbjct 633 ACAGTCGACAAGTCCAAACT 652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 436461567171520