Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq2732657 132 1e-25 seq2442759 123 6e-23 seq642385 95.1 3e-14 >seq2732657 Length=3626 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| || || | ||| ||||| || ||||| || | |||||||| | ||| || | || Sbjct 2702 TCTTAGTACCAAGTGAAGAGTAGATTCCTTCTGAATATTGTAGTCTGACAATGTGCGGCC 2761 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||||||||| || || || ||||| || | ||||||||| ||| ||| ||||| Sbjct 2762 ATCTTCCAGCTGTTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATACCTTCCTT 2821 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || || ||||| || || ||| | |||||| | || |||||| ||||| ||||| Sbjct 2822 ATCTTGGATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGTTCTACTTCCAAGGTGAT 2881 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| ||||| ||||| || || Sbjct 2882 GGTCTTTCCAGTGAGGGTTTTAACAAATATCTG 2914 Score = 129 bits (142), Expect = 1e-24 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || ||||| || |||||||| ||||| || ||||| || | ||||||||||| ||| || Sbjct 2924 TCTAAGTCGGAGTACAAGGTGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGACAATGT 2983 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||||||||| || || || || ||||| || | |||||||| || ||| || Sbjct 2984 GCGGCCATCTTCCAGTTGTTTACCTGCAAAGATCAGCCTTTGCTGGTCTGGGGGAATACC 3043 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || || ||||| || || ||| | ||| |||| || ||| || || | Sbjct 3044 TTCCTTATCTTGGATCTTAGCTTTGACATTTTCAATGGTATCTGATGGTTCAACCTCAAG 3103 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| ||||||||||| || || Sbjct 3104 TGTGATGGTCTTTCCTGTGAGGGTTTTCACAAAGATCTG 3142 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || || || || || || |||| |||||| |||| ||| || | |||||||||| |||| Sbjct 3171 TGAAGTGTGGATTCTTTCTGGATGTTGTAATCAGACAAGGTACGACCATCTTCCAACTGC 3230 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || || || || | | ||| ||||| || ||| ||||| |||||||||||| Sbjct 3231 TTGCCAGCAAAAATCAACCTCTGTTGGTCTGGTGGAATGCCTTCCTTATCCTGAATCTTT 3290 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 |||||| || | ||| || | | ||| || ||||| ||||| ||||| || ||| Sbjct 3291 GCCTTCACATTCTCAATGGTATCAGAAGGTTCGACTTCCAATGTGATGGTCTTTCCTGTG 3350 Query 199607 AGAGTTTTCACAAAAATTTG 199626 || ||||| ||||||||||| Sbjct 3351 AGGGTTTTGACAAAAATTTG 3370 Score = 118 bits (130), Expect = 2e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 |||||||| ||||| | || || || || ||||| || | |||||| || | ||| || Sbjct 1785 CGAAGTCTAAGGACCAAATGAAGGGTAGATTCCTTCTGAATGTTGTAATCTGACAATGTA 1844 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||||||||| || || ||||| || | |||||| || || ||| || Sbjct 1845 CGCCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGTCTCTGCTGATCTGGTGGAATGCCC 1904 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| |||||| || || ||| | ||||| | | ||| || ||||| Sbjct 1905 TCCTTGTCCTGGATCTTTGCTTTTACATTTTCAATTGTGTCAGAGGGTTCAACTTCCAAA 1964 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || ||||| || || || Sbjct 1965 GTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATCTG 2002 Score = 116 bits (128), Expect = 8e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || ||| || || || | ||||| || || ||||| || | |||||||||| || ||| Sbjct 2240 TCTAAGCCTAAGAACTAAATGGAGTGTAGATTCCTTCTGAATATTGTAGTCAGACAGAGT 2299 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | |||||||| |||||||| || || ||||| || | ||||||||| ||| || || Sbjct 2300 GCGACCATCTTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGAGGGATACC 2359 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 ||| || ||||||||| ||| || || | |||||||| | || || || | Sbjct 2360 TTCCTTGTCTTGAATCTTTGCCTTTACATTCTCAATGGTGTCTGAAGGCTCCACTTCTAG 2419 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || || |||||||||||||| Sbjct 2420 GGTAATTGTTTTTCCTGTAAGGGTCTTCACAAAAATTTG 2458 Score = 91.5 bits (100), Expect = 3e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||| || |||||||||||||||||||| | || ||| | ||||||||| | ||||| Sbjct 3472 ATCTTTGCTGGAAAGCAGTTGGAAGATGGTCGTACATTGTCTGATTACAACATTCAGAAG 3413 Query 200998 GAGTCTACTCTTCACCTTGT 201017 || ||||||||||||||||| Sbjct 3412 GAATCTACTCTTCACCTTGT 3393 Score = 86.0 bits (94), Expect = 1e-11 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 ||||| || |||||||| |||| ||||| |||| ||| || | ||||||||||||||| Sbjct 2487 TGGAGCGTGGACTCCTTCTGGATATTGTAATCAGACAATGTACGACCATCTTCCAGCTGC 2546 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || || || || || | | ||| || || ||| || ||||| || || ||||| Sbjct 2547 TTACCAGCAAAAATCAACCTCTGTTGATCAGGAGGGATGCCTTCCTTATCTTGGATCTTA 2606 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 || || ||| | || || | || || || || | || || || || || ||| Sbjct 2607 GTTTTAACATTTTCAATAGTATCAGATGGCTCAACCTCAAGTGTTATGGTTTTTCCTGTG 2666 Query 199607 AGAGTTTTCACAAAAATTTG 199626 || ||||||||||| || || Sbjct 2667 AGGGTTTTCACAAAGATCTG 2686 >seq2442759 Length=1285 Score = 123 bits (136), Expect = 6e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| ||||| | || || || || ||||| |||| |||||| || | ||| || | || Sbjct 98 TCTAAGGACCAAATGAAGTGTAGATTCCTTCTGGATGTTGTAATCTGACAATGTGCGGCC 157 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||||||||||||||| || ||||| | | ||||||||| || ||| || || Sbjct 158 ATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCGGGTGGAATGCCCTCCTT 217 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGAT 199593 || || |||||| ||| || ||||| |||||||| | ||||| || | || || Sbjct 218 ATCTTGGATCTTTGCCTTTACATTTTCGATGGTGTCTGAAGGCTCTACCTCAAGGGTAAT 277 Query 199594 CGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || ||||| || |||||||| || || Sbjct 278 GGTCTTCCCAGTGAGTGTCTTCACAAAGATCTG 310 >seq642385 Length=370 Score = 95.1 bits (104), Expect = 3e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 199414 TCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCC 199473 ||| ||||| | ||||| || || ||||| |||| ||||||||| | ||| || | || Sbjct 51 TCTAAGGACCAAATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCTGACAATGTGCGGCC 110 Query 199474 ATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCG 199533 |||||||||||||||||| || ||||| | | ||| ||||| || || ||||| Sbjct 111 ATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGTTGGTCTGGGGGGATCCCTTCCTT 170 Query 199534 CTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA-CGTGA 199592 || || ||||| |||||| ||| | | ||||| || ||| | | ||| ||| | Sbjct 171 ATCTTGGATCTTGGCCTTCACAATTTCAATTGAGTCTGATGGATCT-CGTACAAGCGTAA 229 Query 199593 TCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || || || || || || Sbjct 230 GGGTCTTTCCTGTTAGTGTCTTGACGAAGATCTG 263 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1137372279537704