Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq2750648 123 2e-23 seq1400646 87.8 1e-12 >seq2750648 Length=12224 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 39511 ACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGT-TCATCGTC 39569 |||||||| | || ||||||||| || |||||||| | || || | | ||| || Sbjct 11031 ACCAAATGAATTGTAGATTCTTTTTGAATGTTATAATCAGT-AATACATTTATTATCTTC 10973 Query 39570 CAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCA 39629 |||||||| ||| | |||||||| ||||| ||||| | || | ||||||||||| Sbjct 10972 TAATTGTTTACCGGCGAAAATTAATCGCTGTTGATCGGGAGGAATACCTTCTTTGTCTTG 10913 Query 39630 TATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTT 39689 |||||||||||||| | ||| ||| ||| | ||| || || | ||||||||| || Sbjct 10912 TATTTTTTGTTTAAGTTTTTCTATTGTCTCTCCCGATTCTACTTCTATAGTAATTGTCTT 10853 Query 39690 ACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||| || | ||||||||||| || ||||| Sbjct 10852 ACCAGTGAGTGTTTTTACGAATATTTGCAT 10823 >seq1400646 Length=492 Score = 87.8 bits (96), Expect = 1e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 39564 ATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTT 39623 ||| || |||||||| ||| | |||||||| ||||| ||||| | || | ||| |||| Sbjct 9 ATCTTCTAATTGTTTACCGGCGAAAATTAATCGCTGTTGATCGGGAGGAATACCTACTTT 68 Query 39624 GTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAAT 39683 ||| ||||| |||||||| | ||| | | | | | ||| || || | | |||| Sbjct 69 GTCTTGTATTTGTTGTTTAAGTTTTTCTATTTTCTTTCCCGCTTCTACTTCTATATTAAT 128 Query 39684 TGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||| ||||| || | ||||||||||| || ||||| Sbjct 129 TGTCTTACCAGTGAGTGTTTTTACGAATATTTGCAT 164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 335724276450296