Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2732095 179 4e-40 seq2732657 107 2e-18 seq2442759 104 2e-17 seq2750648 86.0 6e-12 seq2605843 84.2 2e-11 >seq2732095 Length=3591 Score = 179 bits (198), Expect = 4e-40 Identities = 527/808 (65%), Gaps = 13/808 (2%) Strand=Plus/Minus Query 132550 TAAAAGTCCGCATCCAAAGTAAAGGT------GTC-GTCCTTGGCAAACATCACGCCAAA 132602 ||||| || ||||||| ||| ||| | ||| || |||| |||| || ||| | Sbjct 1829 TAAAAATCAGCATCCAGAGTGAAGCTACGCTGGTCTGTGCTTG----ACATAACTCCACA 1774 Query 132603 TTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAG 132662 |||||| || ||||| || | || ||||| || || ||||| ||||| | || ||| Sbjct 1773 TTTTTGGTACTCGCCTACTCTCTTTTCAAAGAAGTTGGTTTTACCCTCAAGAGATATGTT 1714 Query 132663 CGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAG 132722 ||| || || || || || ||| ||||| |||| | | || || || || Sbjct 1713 TTCCATGAAGTCAAATGGATTCTCTGCATTGTAAAGCTTATCACAGCCTAGCTCCACAAG 1654 Query 132723 CAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAG 132782 || | || || || || || ||||||||| ||| | || || | || | || Sbjct 1653 AAGACGATCTGCAACAAATTCAATGTATTGCCTCATAAGAACACAGTTCATACCAATGAG 1594 Query 132783 ACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGAT 132842 | || ||||| || || || | || ||| || || ||| || || | ||| Sbjct 1593 ATTGACAGGCAGAGCATCAGTTAAGAATTCTTGTTCAATTTTGACGGCATCATCAATGAT 1534 Query 132843 TTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAA 132902 | ||| || || ||| | ||||||||||||||||| | || ||||| Sbjct 1533 AGACTGAACATGCTGTTGACTAGGCTTGTTTACCAAATGCTTGAACATGAGACAGGCAAA 1474 Query 132903 GTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCAT 132962 ||| || | || || |||||||| || | ||| ||||| || || | || ||||| Sbjct 1473 GTCAGTGTGAAGACCTTCATCCCTGGAGATTAATTCATTGCTAAAGGTAAGACCAGGCAT 1414 Query 132963 GAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTC 133022 ||||| ||||| ||||||||||| || || || || || ||||| | || || Sbjct 1413 CAGGCCACGTTTCTTGAGCCAAAAGATCGCAGCAAAGGAACCGCTGAAGAAAATACCTTC 1354 Query 133023 GACGGCCGCGAAAGCCACCAGGCGCTC-GCCGAACGTGGCTTCTTTGCTGGCGATCCAGC 133081 || || || || || | | || || || ||| | || || ||| ||||| | Sbjct 1353 CACAGCAGCAAAGGCAATGATACGTTCAGCATAAC-TAGCAGTTTCATGGGCAATCCATC 1295 Query 133082 GCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAAC 133141 ||| ||||| || ||||| | |||||| || |||| || || | ||| || |||| | Sbjct 1294 TCAGAGCCCAGTCAGCCTTCTTTTTGACACAAGGCAAGGTCTCAACGGCATTGAACAGTC 1235 Query 133142 GGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGT 133201 || ||||| ||| | | |||||||| |||||| |||||||| || Sbjct 1234 TATTTTGTTCTTCAGAGTCTCTGATGTAGGTGTTGATGAGTAAACTGTACATTTCACTGT 1175 Query 133202 GTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTT 133261 | | || ||||| || ||||| || || |||||||| | || || || || |||| Sbjct 1174 GGATATTTTCCATTGCAATTTGGAAACCATAAAAGCATCTTGCTTCTGGAACTTGAACTT 1115 Query 133262 CTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGG 133321 |||| ||| | |||||| |||||||| || || || || || || |||||||| | Sbjct 1114 CTTGGCAGAATCTCTCGACAAGATTTTCATTAACAATCCCATCAGAAGCAGCGAAAAATG 1055 Query 133322 CCAGCACGTGCTTGATGAAATGGCGCTC 133349 ||||||| || |||||||| | ||| Sbjct 1054 CCAGCACATGGGAAATGAAATGTCTCTC 1027 >seq2732657 Length=3626 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| ||||| || ||||| ||||| || || ||||||||| | || || || | | Sbjct 2917 ATGCAGATATTTGTTAAAACCCTCACTGGAAAGACCATCACCTTGGAAGTAGAACCATCT 2858 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | ||| | |||| || |||| || || || || ||||| | ||||| Sbjct 2857 GACACCATTGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGTATTCCTCCAGACCAG 2798 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || || ||||||||||| || | ||||| | |||||||| Sbjct 2797 CAGAGGCTGATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACATTGTCAGACTACAAT 2738 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || |||||| | || || || ||||| || | |||||||| || Sbjct 2737 ATTCAGAAGGAATCTACTCTTCACTTGGTACTAAGATTGAGAGGTGG 2691 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| ||||| || || |||||||| | || ||||| | | Sbjct 3373 ATGCAAATTTTTGTCAAAACCCTCACAGGAAAGACCATCACATTGGAAGTCGAACCTTCT 3314 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | || | ||| || | || || || || ||||| | |||||| Sbjct 3313 GATACCATTGAGAATGTGAAGGCAAAGATTCAGGATAAGGAAGGCATTCCACCAGACCAA 3254 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | |||| || ||||| ||| |||| || | || ||| | || |||||| Sbjct 3253 CAGAGGTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGTCGTACCTTGTCTGATTACAAC 3194 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || ||| | || || ||||||||||| || |||||||| || Sbjct 3193 ATCCAGAAAGAATCCACACTTCATTTGGTGCTTCGATTGAGAGGTGG 3147 >seq2442759 Length=1285 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || ||||| || || ||||| ||| | || || ||| | Sbjct 316 AACATGCAGATCTTTGTGAAGACACTCACTGGGAAGACCATTACCCTTGAGGTAGAGCCT 257 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | ||| | || | ||| |||| || || ||||| ||||| ||||| Sbjct 256 TCAGACACCATCGAAAATGTAAAGGCAAAGATCCAAGATAAGGAGGGCATTCCACCCGAC 197 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| || | || | || || || |||||||| || | ||||| | || ||| Sbjct 196 CAGCAGAGGTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGCACATTGTCAGATTAC 137 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||||| |||||| | || || |||||||| || | || ||||| || Sbjct 136 AACATCCAGAAGGAATCTACACTTCATTTGGTCCTTAGATTAAGAGGTGG 87 >seq2750648 Length=12224 Score = 86.0 bits (94), Expect = 6e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 || ||||||||||||||||||||| ||||| || || || || || | || || || | Sbjct 10819 AATAATGCAAATATTCGTAAAAACACTCACTGGTAAGACAATTACTATAGAAGTAGAATC 10878 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 || | | ||| |||||| ||||||| | |||||||| || ||||| |||| Sbjct 10879 GGGAGAGACAATAGAAAAACTTAAACAAAAAATACAAGACAAAGAAGGTATTCCTCCCGA 10938 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACA 38389 |||||||| | |||| ||| || ||||| Sbjct 10939 TCAACAGCGATTAATTTTCGCCGGTAAACA 10968 >seq2605843 Length=1800 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||||||||| || || | |||||||| ||||| ||| | |||||| | ||| | Sbjct 637 ATGCAAATATTCGTCAAGACCTTAACGGGCAAGACCATAACCTTAGACGTCAATTCCAAC 578 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | || || | || ||| || | || | |||||| | || || | ||| Sbjct 577 GACACTATTCAGACAGTGAAGGAATTTATTCAAGATAGAGAGGGCGTACCGCCCAATCAA 518 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | || || | |||| ||||| ||||| ||||| || || |||||||| Sbjct 517 CAGAGACTAATATTTTCGGGGAAACAACTGGAAGACGACAAAACTCTTTTAGACTACAAT 458 Query 38424 ATCCA-AAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||| |||| |||| || |||| | || | || |||||||| || Sbjct 457 GTCCAGAAAGAAAGC-ACTTTGCACCTCGTTTTACGCTTGAGAGGGGG 411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482974908462080