Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq2732657 167 5e-36 seq2750648 138 2e-27 seq642385 87.8 4e-12 >seq2732657 Length=3626 Score = 167 bits (184), Expect = 5e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || || | ||| | || || || || || || ||||||||||| || | ||||| Sbjct 2240 TCTAAGCCTAAGAACTAAATGGAGTGTAGATTCCTTCTGAATATTGTAGTCAGACAGAGT 2299 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| ||||| ||||| || | || ||||||||||| || || Sbjct 2300 GCGACCATCTTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGAGGGATACC 2359 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||||||||| ||| ||| || |||||||||||||| ||| |||||||| || Sbjct 2360 TTCCTTGTCTTGAATCTTTGCCTTTACATTCTCAATGGTGTCTGAAGGCTCCACTTCTAG 2419 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| || |||||||| | || || || || | |||||| Sbjct 2420 GGTAATTGTTTTTCCTGTAAGGGTCTTCACAAAAATTTGCAT 2461 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||||||||| || || || ||||| |||||||| | | || | |||||||| Sbjct 3393 ACAAGGTGAAGAGTAGATTCCTTCTGAATGTTGTAATCAGACAATGTACGACCATCTTCC 3452 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || || ||||| | | ||||||||||||||||| ||||| || ||||| Sbjct 3453 AACTGCTTTCCAGCAAAGATCAACCTCTGTTGGTCTGGAGGAATACCTTCCTTATCTTGG 3512 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||| || |||||||| || || ||| || |||||||| | |||||| Sbjct 3513 ATCTTAGCTTTGACATTTTCAATGGTATCTGATGGTTCTACCTCAAGGGTTATGGTCTTT 3572 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| | || || ||||| | ||||| Sbjct 3573 CCTGTGAGTGTCTTGACGAAGATCTGCAT 3601 Score = 140 bits (154), Expect = 7e-28 Identities = 164/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| |||| | |||||||||||||| || || || ||||| ||||| || | | || Sbjct 2924 TCTAAGTCGGAGTACAAGGTGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGACAATGT 2983 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| || || |||||||| ||||| || | ||| |||||||| ||||| || Sbjct 2984 GCGGCCATCTTCCAGTTGTTTACCTGCAAAGATCAGCCTTTGCTGGTCTGGGGGAATACC 3043 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| || ||||| || || ||||| || |||||||| || || ||| || ||||| Sbjct 3044 TTCCTTATCTTGGATCTTAGCTTTGACATTTTCAATGGTATCTGATGGTTCAACCTCAAG 3103 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||||||||| | ||||| || || | ||||| Sbjct 3104 TGTGATGGTCTTTCCTGTGAGGGTTTTCACAAAGATCTGCAT 3145 Score = 140 bits (154), Expect = 7e-28 Identities = 155/204 (76%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGG-CAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||| ||||| ||||| || || |||||||| | |||| || | |||||||| | ||| Sbjct 3171 TGAAGTGTGGATTCTTTCTGGATGTTGTAATCAGACAAG-GTACGACCATCTTCCAACTG 3229 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || || || | | ||||||||||| ||||||||||| || || ||||| || Sbjct 3230 CTTGCCAGCAAAAATCAACCTCTGTTGGTCTGGTGGAATGCCTTCCTTATCCTGAATCTT 3289 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 | ||| || ||||||||||| || ||| ||| ||||| | || | ||||||||||| Sbjct 3290 TGCCTTCACATTCTCAATGGTATCAGAAGGTTCGACTTCCAATGTGATGGTCTTTCCTGT 3349 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | ||||| || || | |||||| Sbjct 3350 GAGGGTTTTGACAAAAATTTGCAT 3373 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| | ||| | || | ||||||||| || || || ||||||||||| || | | || Sbjct 2696 TCTCAATCTTAGTACCAAGTGAAGAGTAGATTCCTTCTGAATATTGTAGTCTGACAATGT 2755 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| ||||| ||||| || ||||| || | || |||||||||||||| || Sbjct 2756 GCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATACC 2815 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| || ||||| || || ||||| || ||||||||||| || ||| ||||| | Sbjct 2816 TTCCTTATCTTGGATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGTTCTACTTCCAA 2875 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | |||||||| || | ||||| || || | ||||| Sbjct 2876 GGTGATGGTCTTTCCAGTGAGGGTTTTAACAAATATCTGCAT 2917 Score = 113 bits (124), Expect = 1e-19 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| || || | ||| | || || || || || || ||||||||||| || | | ||| Sbjct 2012 TCTAAGCCTGAGAACCAAATGGAGTGTAGATTCCTTCTGAATATTGTAGTCAGACAAAGT 2071 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| | ||||||||| || ||||| | || || |||||||| || || || Sbjct 2072 ACGACCATCTTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGGTCTGGGGGGATACC 2131 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| || ||||| || || ||||| || |||||||| || || ||| ||||| | Sbjct 2132 TTCCTTATCTTGGATCTTGGCTTTGACATTTTCAATGGTATCAGATGGTTCTACTTCCAA 2191 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | |||||||| || | || || ||||| | ||||| Sbjct 2192 TGTGATGGTCTTTCCAGTAAGTGTCTTCACGAAGATCTGCAT 2233 Score = 107 bits (118), Expect = 4e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| || | || | || || |||||||| || || ||||||||||| | | || Sbjct 2468 TCTGAGCCTGAGTACTAAATGGAGCGTGGACTCCTTCTGGATATTGTAATCAGACAATGT 2527 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| ||||||||||| || || || | | ||||| || ||||| ||||| Sbjct 2528 ACGACCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGTTGATCAGGAGGGATGCC 2587 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| || ||||| || || || || || ||||| || || || || || ||||| Sbjct 2588 TTCCTTATCTTGGATCTTAGTTTTAACATTTTCAATAGTATCAGATGGCTCAACCTCAAG 2647 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || | || |||||||| | ||||| || || | ||||| Sbjct 2648 TGTTATGGTTTTTCCTGTGAGGGTTTTCACAAAGATCTGCAT 2689 >seq2750648 Length=12224 Score = 138 bits (152), Expect = 2e-27 Identities = 167/226 (74%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| ||||||||||| | |||| || || ||||||||||| || ||||| | || | Sbjct 11044 TCTAAGTCTCAAAACCAAATGAATTGTAGATTCTTTTTGAATGTTATAATCAGTAATACA 10985 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | | |||||| | || ||||| ||||| || | ||| ||||| || |||||||| || Sbjct 10984 TTTATTATCTTCTAATTGTTTACCGGCGAAAATTAATCGCTGTTGATCGGGAGGAATACC 10925 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTC---CGAACTTTCCACTTC 195095 |||||||||||| |||||||| || | || || || || || ||| ||| ||||| Sbjct 10924 TTCTTTGTCTTGTATTTTTTGTTTAAGTTTTTCTATTGTCTCTCCCGA---TTCTACTTC 10868 Query 195096 AAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 | |||| ||||| || || | ||||||||||| | ||||||| Sbjct 10867 TATAGTAATTGTCTTACCAGTGAGTGTTTTTACGAATATTTGCATT 10822 >seq642385 Length=370 Score = 87.8 bits (96), Expect = 4e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || || || || || || || || ||||| || | | || | |||||||| |||||| Sbjct 64 TGGAGTGTAGATTCCTTCTGGATGTTGTAGTCTGACAATGTGCGGCCATCTTCCAGCTGC 123 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| | | ||||||||||| || || ||||| || ||||| || || Sbjct 124 TTTCCAGCAAAGATCAACCTCTGTTGGTCTGGGGGGATCCCTTCCTTATCTTGGATCTTG 183 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || | ||||| | ||| || || | |||| |||| ||||||||||| Sbjct 184 GCCTTCACAATTTCAATTGAGTCTGATGGATCTCGTACAAGCGTAAGGGTCTTTCCTGTT 243 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | ||||| Sbjct 244 AGTGTCTTGACGAAGATCTGCAT 266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1070379588004104