Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2732095 338 7e-88 seq2601243 96.9 4e-15 seq2191123 87.8 2e-12 seq177455 87.8 2e-12 >seq2732095 Length=3591 Score = 338 bits (374), Expect = 7e-88 Identities = 532/762 (70%), Gaps = 0/762 (0%) Strand=Plus/Minus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| ||||| |||||| || ||| | ||||| ||||||||||| || ||||| ||||| Sbjct 1785 CATAACTCCACATTTTTGGTACTCGCCTACTCTCTTTTCAAAGAAGTTGGTTTTACCCTC 1726 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCC 18776 | ||||| |||||| || ||||||||||| | | |||| || | || | | || Sbjct 1725 AAGAGATATGTTTTCCATGAAGTCAAATGGATTCTCTGCATTGTAAAGCTTATCACAGCC 1666 Query 18777 TAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATT 18836 || || | || || | ||| || ||||||| ||| ||| |||| | | |||| || Sbjct 1665 TAGCTCCACAAGAAGACGATCTGCAACAAATTCAATGTATTGCCTCATAAGAACACAGTT 1606 Query 18837 CATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGC 18896 ||| || || | || ||||| || ||||| || | ||||||||||| || || || || Sbjct 1605 CATACCAATGAGATTGACAGGCAGAGCATCAGTTAAGAATTCTTGTTCAATTTTGACGGC 1546 Query 18897 CTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACAT 18956 || || ||||| ||| | || | |||| || || | ||| || ||||| Sbjct 1545 ATCATCAATGATAGACTGAACATGCTGTTGACTAGGCTTGTTTACCAAATGCTTGAACAT 1486 Query 18957 CAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGT 19016 | ||| ||||| ||| || || || || || || || |||||||| ||| || Sbjct 1485 GAGACAGGCAAAGTCAGTGTGAAGACCTTCATCCCTGGAGATTAATTCATTGCTAAAGGT 1426 Query 19017 TAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAA 19076 | |||||||||||| || | ||| || | ||| || || | |||||| || || || Sbjct 1425 AAGACCAGGCATCAGGCCACGTTTCTTGAGCCAAAAGATCGCAGCAAAGGAACCGCTGAA 1366 Query 19077 GAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATT 19136 ||| |||||||| || || ||||| |||| | | ||| ||||||||||| | || Sbjct 1365 GAAAATACCTTCCACAGCAGCAAAGGCAATGATACGTTCAGCATAACTAGCAGTTTCATG 1306 Query 19137 ATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGA 19196 ||||||| |||| ||||| |||||||||||||| ||||| |||| ||||| | | Sbjct 1305 GGCAATCCATCTCAGAGCCCAGTCAGCCTTCTTTTTGACACAAGGCAAGGTCTCAACGGC 1246 Query 19197 ATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTA 19256 ||| || || | | || || | ||| | | || | | || | ||||||||| Sbjct 1245 ATTGAACAGTCTATTTTGTTCTTCAGAGTCTCTGATGTAGGTGTTGATGAGTAAACTGTA 1186 Query 19257 CATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGT 19316 |||||| || |||||||| || || || || || || ||||| ||||||||||||| Sbjct 1185 CATTTCACTGTGGATATTTTCCATTGCAATTTGGAAACCATAAAAGCATCTTGCTTCTGG 1126 Query 19317 TATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGC 19376 | || ||||| || ||||| ||||| | |||||||||||| || |||||| ||| Sbjct 1125 AACTTGAACTTCTTGGCAGAATCTCTCGACAAGATTTTCATTAACAATCCCATCAGAAGC 1066 Query 19377 TGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATC 19418 || |||||||| | ||||| ||| |||||| | || || Sbjct 1065 AGCGAAAAATGCCAGCACATGGGAAATGAAATGTCTCTCCTC 1024 >seq2601243 Length=1778 Score = 96.9 bits (106), Expect = 4e-15 Identities = 131/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 48384 GTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAA 48443 || ||||||||||| || | ||| || |||| ||||| || | ||||| ||||| | | Sbjct 437 GTGTTGTTATAAACCCTAAGCATAGGCACAAGGCCATTAGAAGTTCCATTCGTTCCTGCA 378 Query 48444 ATATAACTTCCACTAGCTC--TTATATTACTAATTGAAATACCTATACCACCTGCCATTT 48501 ||||||||||| ||| || || | | | ||| | || || ||||| || | Sbjct 377 ATATAACTTCCCATAGATCGAATACAGTGCACATT--CAGTCCAATGCCACCAGCAGACT 320 Query 48502 TAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCA 48561 |||| || ||||||||| | || ||||| |||||||| ||||| || || ||||| ||| Sbjct 319 TAGAAATGAGAGCACACTGCTTGAGGGTGTCATAAATGCCTTCAATGCTGTCATCCTTCA 260 Query 48562 T 48562 | Sbjct 259 T 259 >seq2191123 Length=901 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/199 (70%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 48384 GTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAA 48443 || ||||||||||| || | ||| || |||| ||||| || | ||||| ||||| | | Sbjct 522 GTGTTGTTATAAACCCTAAGCATAGGCACAAGGCCATTAGAAGTTCCATTCGTTCCTGCA 581 Query 48444 ATATAACTTCCACTAGCTC--TTATATTACTAATTGAAATACCTATACCACCTGCCATTT 48501 ||||||||||| | | || || | | | ||| | || || ||||| || | Sbjct 582 ATATAACTTCCCATGGATCGAATACAGTGCACATT--CAGTCCAATGCCACCAGCAGACT 639 Query 48502 TAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCA 48561 |||| || ||||| ||| | || ||||| |||||||| ||||| || || ||||| ||| Sbjct 640 TAGAAATGAGAGCGCACTGCTTGAGGGTGTCATAAATGCCTTCAATGCTGTCATCCTTCA 699 Query 48562 TATTTAATAGAAAACAACT 48580 | ||| | ||||| || Sbjct 700 TGGTTAGCAAGAAACAGCT 718 >seq177455 Length=318 Score = 87.8 bits (96), Expect = 2e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| |||||||||||||| || | || ||| |||| || | ||| ||||| | Sbjct 297 TCCAAGCATAGAAATGCATAGATGTAAGCTTGCCATAGTTAGGCTCAGCAATGTGAATGT 238 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | || || || |||||||||||||||||||| | |||||| ||||| || | | || Sbjct 237 TGAGCGACTGGCTCTGATCAATAAATGCACCACGATCAGCAGCCATCTCCAGTACCACTT 178 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATA 47197 | || | |||||||| || ||||| || Sbjct 177 TCTGAGAGATCTCCCACACAGTTTTGTA 150 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542781307231680