Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq2732095 259 5e-64 >seq2732095 Length=3591 Score = 259 bits (286), Expect = 5e-64 Identities = 518/765 (68%), Gaps = 2/765 (0%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||||||||| |||||| || || || |||| |||| || || || || || || || Sbjct 1785 CATAACTCCACATTTTTGGTACTCGCCTACTCTCTTTTCAAAGAAGTTGGTTTTACCCTC 1726 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGA 36991 || ||||| |||||||| || ||||||||||| || ||| || | || ||| Sbjct 1725 AAGAGATATGTTTTCCATGAAGTCAAATGGATTCTCTGCATTGTAAAGCTTATCACAGCC 1666 Query 36992 TAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTT 37051 || ||| ||||| | ||| ||||||||||| ||||||| | ||| || || |||| Sbjct 1665 TAGCTCCACAAGAAGACGATCTGCAACAAATTCAATGTATTGCCTCATAAGAACACAGTT 1606 Query 37052 TATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTACAG 37110 |||||||| || || || || | ||||| | ||||| | || ||| ||| | || | Sbjct 1605 CATACCAATGAGATTGACAGGCAGAGCATCAGTTAAGAATTC-TTGTTCAATTTTGACGG 1547 Query 37111 CATCTTTAACTATATTAACAATAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACA 37170 |||| | || ||| || | | || | | || | | |||| || |||| Sbjct 1546 CATCATCAATGATAGACTGAACATGCTGTTGACTAGGCTTGTTTACCAAATGCTTGAACA 1487 Query 37171 ATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGG 37230 | ||| ||||| ||| || | ||||||||| || || |||||||| ||||| Sbjct 1486 TGAGACAGGCAAAGTCAGTGTGAAGACCTTCATCCCTGGAGATTAATTCATTGCTAAAGG 1427 Query 37231 TTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAA 37290 | | || ||||| | || | ||| || | |||||| || || ||||| || || | Sbjct 1426 TAAGACCAGGCATCAGGCCACGTTTCTTGAGCCAAAAGATCGCAGCAAAGGAACCGCTGA 1367 Query 37291 AGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAAT 37350 ||||||||||||| || || ||||| || | | |||| | | || | | | | | || Sbjct 1366 AGAAAATACCTTCCACAGCAGCAAAGGCAATGATACGTTCAGCATAACTAGCAGTTTCAT 1307 Query 37351 CAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTG 37410 | ||||||| | | ||| || ||||| ||| ||||| | || |||| | Sbjct 1306 GGGCAATCCATCTCAGAGCCCAGTCAGCCTTCTTTTTGACACAAGGCAAGGTCTCAACGG 1247 Query 37411 CTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTAT 37470 | || || || |||| ||||||| ||| | || || || | || |||||||| | Sbjct 1246 CATTGAACAGTCTATTTTGTTCTTCAGAGTCTCTGATGTAGGTGTTGATGAGTAAACTGT 1187 Query 37471 ACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAG 37530 |||||||| ||| |||||||| || || || || ||||||||||| || || ||||| | Sbjct 1186 ACATTTCACTGTGGATATTTTCCATTGCAATTTGGAAACCATAAAAGCATCTTGCTTCTG 1127 Query 37531 ATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAG 37590 | |||||| || | | || |||| | | ||||||||||| ||||||||| || Sbjct 1126 GAACTTGAACTTCTTGGCAGAATCTCTCGACAAGATTTTCATTAACAATCCCATCAGAAG 1067 Query 37591 CTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAT 37635 | || || || || || |||| || |||||||| || |||| Sbjct 1066 CAGCGAAAAATGCCAGCACATGGGAAATGAAATGTCTCTCCTCAT 1022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571950638380480