Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq2738736 111 1e-19 >seq2738736 Length=4073 Score = 111 bits (122), Expect = 1e-19 Identities = 162/227 (71%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 29872 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC 29931 || || || || || |||||||| ||||| |||| || || || ||||| || || || Sbjct 2025 CCAGTTACATGGGCAATCATGTAGGTGAGAAGAGCATAACTAGCAATGTTGAAAGGAACT 1966 Query 29932 CCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACG 29991 || || ||||| || | || || ||||| ||||| || ||||| ||||| | ||| Sbjct 1965 CCAAGACCCATATCTGCTGATCTTTGGTATAGCTGGCAAGAGAGTTCTCCATTAGCCACA 1906 Query 29992 TAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCA--TGAGGCCCAAGTCTTTGGGGT 30049 ||||||||||||| |||||| ||||| | |||| | | | || || || | Sbjct 1905 TAAAACTGACACAGACAGTGGCATGGAGGCAAGGCCATTTTAAGAACA--TCAACCGGAT 1848 Query 30050 TCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATG 30096 |||| || |||| ||| ||||| | || | |||||||||| ||||| Sbjct 1847 TCCAAGCACACATGATTATGCGTCGATCATTTGGGTTGTTCTTGATG 1801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394918979970776