Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq2750648 150 1e-31 seq2732657 138 9e-28 seq1400646 95.1 9e-15 >seq2750648 Length=12224 Score = 150 bits (166), Expect = 1e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 ||||| ||||||| |||||||||||||| || || ||||| | ||| | | ||| Sbjct 11034 AAAACCAAATGAATTGTAGATTCTTTTTGAATGTTATAATCAGTAATACATTTATTATCT 10975 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 || ||||| ||||| || || || || |||||||||||||| ||||| |||||||| ||| Sbjct 10974 TCTAATTGTTTACCGGCGAAAATTAATCGCTGTTGATCGGGAGGAATACCTTCTTTGTCT 10915 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || ||||||||||| | |||||| || || || ||| ||||| | ||| | || Sbjct 10914 TGTATTTTTTGTTTAAGTTTTTCTATTGTCTCTCCCGATTCTACTTCTATAGTAATTGTC 10855 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTAC 101475 || || || | |||||||| ||||| ||||| |||| Sbjct 10854 TTACCAGTGAGTGTTTTTACGAATATTTGCATTATTAC 10817 >seq2732657 Length=3626 Score = 138 bits (152), Expect = 9e-28 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 |||||||| || || || || || || ||||||||||| | | || | |||| ||| Sbjct 2481 ACTAAATGGAGCGTGGACTCCTTCTGGATATTGTAATCAGACAATGTACGACCATCTTCC 2540 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||||| ||||| ||||| | ||||||||| || || |||||||| |||||||| Sbjct 2541 AGCTGCTTACCAGCAAAAATCAACCTCTGTTGATCAGGAGGGATGCCTTCCTTATCTTGG 2600 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||| ||| |||| | ||| ||||| | || || ||||| || | ||||| Sbjct 2601 ATCTTAGTTTTAACATTTTCAATAGTATCAGATGGCTCAACCTCAAGTGTTATGGTTTTT 2660 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | ||||| ||||| |||||||| Sbjct 2661 CCTGTGAGGGTTTTCACAAAGATCTGCAT 2689 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || ||||||||||||||||| || || || |||||||| | | || | |||| ||| Sbjct 1797 ACCAAATGAAGGGTAGATTCCTTCTGAATGTTGTAATCTGACAATGTACGCCCATCTTCC 1856 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | ||||| |||||||| |||| | ||| ||||| || |||||||| || || || || Sbjct 1857 AGCTGCTTGCCTGCAAAGATCAGTCTCTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGG 1916 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || ||| ||||||| |||| | |||||||| | ||| ||||| | ||||| || || Sbjct 1917 ATCTTTGCTTTTACATTTTCAATTGTGTCAGAGGGTTCAACTTCCAAAGTGATGGTCTTT 1976 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || || || |||||||| Sbjct 1977 CCAGTGAGGGTCTTCACGAAGATCTGCAT 2005 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| || | || || || ||||| |||||||| || || |||||||| || | Sbjct 2691 CCACCTCTCAATCTTAGTACCAAGTGAAGAGTAGATTCCTTCTGAATATTGTAGTCTGAC 2750 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| |||| || ||||| ||||| |||| | ||| || || || ||| Sbjct 2751 AATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 2810 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| |||||||| || || ||| ||| |||| | |||||||| | ||| ||| Sbjct 2811 ATACCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGTTCTACT 2870 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | |||| || || || || | ||||| |||||||||||||| Sbjct 2871 TCCAAGGTGATGGTCTTTCCAGTGAGGGTTTTAACAAATATCTGCAT 2917 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || ||||| || || | || |||||||| || |||||||| || || |||||||| | Sbjct 3147 CCACCTCTCAATCGAAGCACCAAATGAAGTGTGGATTCTTTCTGGATGTTGTAATCAGAC 3206 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| ||||| ||||| || ||||| ||||| | |||||| || || ||| Sbjct 3207 AAGGTACGACCATCTTCCAACTGCTTGCCAGCAAAAATCAACCTCTGTTGGTCTGGTGGA 3266 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| ||||| ||||| ||| || ||| | || | || ||||| | ||| ||| Sbjct 3267 ATGCCTTCCTTATCCTGAATCTTTGCCTTCACATTCTCAATGGTATCAGAAGGTTCGACT 3326 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | |||| || || || || | ||||| ||||| || ||||| Sbjct 3327 TCCAATGTGATGGTCTTTCCTGTGAGGGTTTTGACAAAAATTTGCAT 3373 Score = 118 bits (130), Expect = 8e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 ||||| |||||||| || || || ||||| || | | || | | |||| |||| ||| Sbjct 2943 TGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGACAATGTGCGGCCATCTTCCAGTTGT 3002 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||||||||| |||| | || || || || ||||| ||||| |||||||| || || Sbjct 3003 TTACCTGCAAAGATCAGCCTTTGCTGGTCTGGGGGAATACCTTCCTTATCTTGGATCTTA 3062 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| |||| | || || || | ||| || ||||| |||| || || || || Sbjct 3063 GCTTTGACATTTTCAATGGTATCTGATGGTTCAACCTCAAGTGTGATGGTCTTTCCTGTG 3122 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||||| ||||| |||||||| Sbjct 3123 AGGGTTTTCACAAAGATCTGCAT 3145 >seq1400646 Length=492 Score = 95.1 bits (104), Expect = 9e-15 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || ||||| ||||| || || || || |||||||||||||| ||||| ||| |||| Sbjct 9 ATCTTCTAATTGTTTACCGGCGAAAATTAATCGCTGTTGATCGGGAGGAATACCTACTTT 68 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 ||||| |||| |||||| | |||||| | | || ||| ||||| | | | | Sbjct 69 GTCTTGTATTTGTTGTTTAAGTTTTTCTATTTTCTTTCCCGCTTCTACTTCTATATTAAT 128 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTTAC 101475 || || || || | |||||||| ||||| ||||| |||| Sbjct 129 TGTCTTACCAGTGAGTGTTTTTACGAATATTTGCATTATTAC 170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 382993443044184