Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2732095 143 5e-29 >seq2732095 Length=3591 Score = 143 bits (158), Expect = 5e-29 Identities = 475/735 (65%), Gaps = 21/735 (3%) Strand=Plus/Plus Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 ||| ||||||| || || || |||||||| || || || || ||||| |||||||||| Sbjct 1048 GTGCTGGCATTTTTCGCTGCTTCTGATGGGATTGTTAATGAAAATCTTGTCGAGAGATTC 1107 Query 25657 ACCAGGGAAGTGCA-GTACGTGGAGGCCAAG-TGTTTCTACGGTTTCCAGATGGCCATCG 25714 | ||||| || || | | || |||| || || || |||||||| || || || | Sbjct 1108 TGCCAAGAAGTTCAAGTTCCAGAAG--CAAGATGCTTTTATGGTTTCCAAATTGCAATGG 1165 Query 25715 AAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGA---CGTACATTACAGACGTCG 25771 ||||| | ||| ||| |||| || | || || | | ||||| | |||| | Sbjct 1166 AAAATATCCACAGTGAAATGTA---CAGTTTACTCATCAACACCTACATCAGAGACTCTG 1222 Query 25772 CCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGC 25831 || | || | ||||| |||| | ||| | | || | |||| | |||||| Sbjct 1223 AAGAACAAAATAGACTGTTCAATGCCGTTGAGACCTTGCCTTGTGTCAAAAAGAAGGCTG 1282 Query 25832 GGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCT 25891 ||||| ||| ||||| | | | |||| | || || || | | |||| Sbjct 1283 ACTGGGCTCTGAGATGGATTGCCCATGAAACTGCTAGTTATGCTGAACGTATCATTGCCT 1342 Query 25892 TTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGC 25951 ||||||||||||| || || || ||||||||||| ||||| || ||||| ||||||||| Sbjct 1343 TTGCTGCTGTGGAAGGTATTTTCTTCAGCGGTTCCTTTGCTGCGATCTTTTGGCTCAAG- 1401 Query 25952 AGAAGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGT 26010 | | | || | ||||| || || |||| ||| || | ||| |||||| || ||| Sbjct 1402 AAACGTGGCCTGATGCCTGGTCTTACCTTTAGCAATGAATTAATCTCCAGGGATGAAGGT 1461 Query 26011 CTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTTCTCAA 26070 || |||| || |||||||| || | | || | || ||| | |||| ||| |||| Sbjct 1462 CTTCACACTGACTTTGCCTGTCTCATGTTCAAG---CATTTGGTAAACAAGCCTAGTCAA 1518 Query 26071 GAGACCGTCTACAG--TATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNN 26128 || | | | ||| |||||| | || || || | || || | || || Sbjct 1519 CAG--CATGTTCAGTCTATCATTGATGATGCCGTCAAAATTGAACAAGAATTCTTAACTG 1576 Query 26129 NNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGT 26188 | || |||||| || ||||| ||||||||||| | Sbjct 1577 ATGCTCTGCCTGTCAATCTCATTGGTATGAACTGTGTTCTTATGAGGCAATACATTGAAT 1636 Query 26189 ATGTGGCCGACCATCTGC-TGTGCCAGCTGGGACTCGCCAGACTCTACAGTACGCCTAAC 26247 ||| || || | ||| | |||| |||| || | | || |||| | | || Sbjct 1637 TTGTTGCAGATCGTCTTCTTGTG-GAGCTAGGCTGTGATAAGCTTTACAATGCAGAGAAT 1695 Query 26248 CCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGG 26307 || || ||||| |||||||||||||| | || || || |||||||||||||||||||| Sbjct 1696 CCATTTGACTTCATGGAAAACATATCTCTTGAGGGTAAAACCAACTTCTTTGAAAAGAGA 1755 Query 26308 GTCGGCGACTATCAA 26322 || ||||| || ||| Sbjct 1756 GTAGGCGAGTACCAA 1770 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 896907493281280