Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq2732657 158 2e-33 seq2750648 150 3e-31 seq1400646 107 3e-18 seq2442759 105 1e-17 seq642385 95.1 2e-14 >seq2732657 Length=3626 Score = 158 bits (174), Expect = 2e-33 Identities = 177/237 (75%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||||||||| | | ||||| | ||| | || | ||| || ||||| Sbjct 2453 AATTTGCATACCACCTCTGAGCCTGAGTACTAAATGGAGCGTGGACTCCTTCTGGATATT 2512 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || || || || | | ||| || | || || || |||||||| || |||||||| Sbjct 2513 GTAATCAGACAATGTACGACCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGTTG 2572 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 ||||||||| || ||||| |||||||| || || ||||| | |||| ||||||||| || Sbjct 2573 ATCAGGAGGGATGCCTTCCTTATCTTGGATCTTAGTTTTAACATTTTCAATAGTATCAGA 2632 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | |||||| || || ||||| ||||| ||||| || ||||| ||||| || ||||| Sbjct 2633 TGGCTCAACCTCAAGTGTTATGGTTTTTCCTGTGAGGGTTTTCACAAAGATCTGCAT 2689 Score = 140 bits (154), Expect = 6e-28 Identities = 173/237 (73%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| ||||||||||||||||| ||||| || || | |||| || || ||| || Sbjct 3365 AATTTGCATACCACCTCTCAATCGGAGTACAAGGTGAAGAGTAGATTCCTTCTGAATGTT 3424 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 || || || || || | | ||| || || || ||||| ||||| || || |||||||| Sbjct 3425 GTAATCAGACAATGTACGACCATCTTCCAACTGCTTTCCAGCAAAGATCAACCTCTGTTG 3484 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || ||||| || ||||| |||||||| || || | ||| | |||| ||| ||||| || Sbjct 3485 GTCTGGAGGAATACCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCAATGGTATCTGA 3544 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || || || || ||||| || || ||||| || || || || || || ||||| Sbjct 3545 TGGTTCTACCTCAAGGGTTATGGTCTTTCCTGTGAGTGTCTTGACGAAGATCTGCAT 3601 Score = 136 bits (150), Expect = 7e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||||||||||||||| |||| ||| | ||| | ||||| || || || || Sbjct 3144 ATACCACCTCTCAATCGAAGCACCAAATGAAGTGTGGATTCTTTCTGGATGTTGTAATCA 3203 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || || | | ||| || || || || || |||||||| || |||||||| || || Sbjct 3204 GACAAGGTACGACCATCTTCCAACTGCTTGCCAGCAAAAATCAACCTCTGTTGGTCTGGT 3263 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| ||||| || || || | || | ||| ||| ||||| |||| || Sbjct 3264 GGAATGCCTTCCTTATCCTGAATCTTTGCCTTCACATTCTCAATGGTATCAGAAGGTTCG 3323 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| | || || || || ||||| || ||||| ||||| |||||||| Sbjct 3324 ACTTCCAATGTGATGGTCTTTCCTGTGAGGGTTTTGACAAAAATTTGCAT 3373 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| | | ||| || | ||| | ||||| || || |||||| ||||| Sbjct 2232 ATACCACCTCTAAGCCTAAGAACTAAATGGAGTGTAGATTCCTTCTGAATATTGTAGTCA 2291 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | | ||| || | || || || ||||| || | ||||| || || ||| Sbjct 2292 GACAGAGTGCGACCATCTTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGA 2351 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || || | |||| ||| ||| || || |||| ||| Sbjct 2352 GGGATACCTTCCTTGTCTTGAATCTTTGCCTTTACATTCTCAATGGTGTCTGAAGGCTCC 2411 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || || ||||| ||||| || || || ||||| |||||||| Sbjct 2412 ACTTCTAGGGTAATTGTTTTTCCTGTAAGGGTCTTCACAAAAATTTGCAT 2461 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||||||||||| ||||||| || | |||| || || |||||| ||||| Sbjct 2688 ATACCACCTCTCAATCTTAGTACCAAGTGAAGAGTAGATTCCTTCTGAATATTGTAGTCT 2747 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || || | ||| || | ||||| || ||||| || | ||||| || || ||| Sbjct 2748 GACAATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGA 2807 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| |||||||| || || | ||| | |||| ||| || || || | || Sbjct 2808 GGAATACCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGTTCT 2867 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| | || || || || || || || ||||| |||||||| ||||| Sbjct 2868 ACTTCCAAGGTGATGGTCTTTCCAGTGAGGGTTTTAACAAATATCTGCAT 2917 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| | ||| ||||| || || | |||| || || ||| || ||||| Sbjct 2916 ATACCACCTCTAAGTCGGAGTACAAGGTGAAGAGTAGATTCCTTCTGAATGTTGTAGTCA 2975 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || || | ||| || | |||||| || ||||| || | || || || || || Sbjct 2976 GACAATGTGCGGCCATCTTCCAGTTGTTTACCTGCAAAGATCAGCCTTTGCTGGTCTGGG 3035 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| |||||||| || || | ||| | |||| ||| ||||| || | ||| Sbjct 3036 GGAATACCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCAATGGTATCTGATGGTTCA 3095 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || || || || ||||| || ||||| ||||| || ||||| Sbjct 3096 ACCTCAAGTGTGATGGTCTTTCCTGTGAGGGTTTTCACAAAGATCTGCAT 3145 >seq2750648 Length=12224 Score = 150 bits (166), Expect = 3e-31 Identities = 179/240 (75%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 193123 TAATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATAT 193182 ||| || ||| || ||||| | || | |||| ||| | ||||| ||||| ||| | Sbjct 11060 TAAGTTGTATCCCCCCTCTAAGTCTCAAAACCAAATGAATTGTAGATTCTTTTTGAATGT 11001 Query 193183 TATAGTCGGATA-ACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGT 193241 |||| || | | || || || ||| ||||||||||| ||||| |||||||||| |||| Sbjct 11000 TATAATCAGTAATACATT-TATTATCTTCTAATTGTTTACCGGCGAAAATTAATCGCTGT 10942 Query 193242 TGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCG 193301 ||||| ||||| || |||||||| ||||||||||| ||| | ||| || || || Sbjct 10941 TGATCGGGAGGAATACCTTCTTTGTCTTGTATTTTTTGTTTAAGTTTTTCTATTGTCTCT 10882 Query 193302 GAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || ||||||| ||| || || ||||| || || |||||||| |||||||||||| Sbjct 10881 CCCGATTCTACTTCTATAGTAATTGTCTTACCAGTGAGTGTTTTTACGAATATTTGCATT 10822 >seq1400646 Length=492 Score = 107 bits (118), Expect = 3e-18 Identities = 118/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| ||||||||||| ||||| |||||||||| ||||||||| ||||| || ||| |||| Sbjct 9 ATCTTCTAATTGTTTACCGGCGAAAATTAATCGCTGTTGATCGGGAGGAATACCTACTTT 68 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 |||||||||| ||| | ||| || | | | || ||||||| | | || Sbjct 69 GTCTTGTATTTGTTGTTTAAGTTTTTCTATTTTCTTTCCCGCTTCTACTTCTATATTAAT 128 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| || || |||||||| |||||||||||| Sbjct 129 TGTCTTACCAGTGAGTGTTTTTACGAATATTTGCATT 165 >seq2442759 Length=1285 Score = 105 bits (116), Expect = 1e-17 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| |||| ||| |||| ||| | ||||| || || || || || || Sbjct 84 ATACCACCTCTTAATCTAAGGACCAAATGAAGTGTAGATTCCTTCTGGATGTTGTAATCT 143 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || || | ||| || | || ||||| ||||| || || ||||| || || || Sbjct 144 GACAATGTGCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCGGGT 203 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || || || |||||||| || || | |||| |||| || || || |||| ||| Sbjct 204 GGAATGCCCTCCTTATCTTGGATCTTTGCCTTTACATTTTCGATGGTGTCTGAAGGCTCT 263 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || || || || || || || || || || ||||| || ||||| || Sbjct 264 ACCTCAAGGGTAATGGTCTTCCCAGTGAGTGTCTTCACAAAGATCTGCATGTT 316 >seq642385 Length=370 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||| |||| ||| |||| ||| | ||||| || || || || ||||| Sbjct 37 ATACCACCTCTTAATCTAAGGACCAAATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCT 96 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || || || | ||| || | || ||||| ||||| || || |||||||| || || Sbjct 97 GACAATGTGCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGTTGGTCTGGG 156 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| |||||||| || |||| || | | || ||| | || || | || Sbjct 157 GGGATCCCTTCCTTATCTTGGATCTTGGCCTTCACAATTTCAATTGAGTCTGATGGATCT 216 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | | || || | || || |||||||| || || || || || ||||| Sbjct 217 CGTACAAGCGTAAGGGTCTTTCCTGTTAGTGTCTTGACGAAGATCTGCAT 266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 868720773075840