Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq2732095 183 4e-41 seq2732657 145 1e-29 seq2750648 113 6e-20 seq2442759 102 1e-16 seq642385 89.7 7e-13 seq1400646 87.8 3e-12 >seq2732095 Length=3591 Score = 183 bits (202), Expect = 4e-41 Identities = 338/492 (69%), Gaps = 6/492 (1%) Strand=Plus/Minus Query 18157 ACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAA 18216 ||| ||||| |||||||| | ||||||||| ||||| |||||||| || ||||| || | Sbjct 1482 ACAGGCAAAGTCAGTGTGAAGACCTTCATCCCTGGAGATTAATTCATTGCTAAAGGTAAG 1423 Query 18217 CCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAA 18276 || ||||| | || | ||| || |||||||| |||| || || || ||||| Sbjct 1422 ACCAGGCATCAGGCCACGTTTCTTGAGCCAAAAGATCGCAGCAAAGGAACCGCTGAAGAA 1363 Query 18277 TATACCCTCAAC-GCACGCGAACGCTATTAATCTTTCAGCAAAACT-GTA-TTTATTGCT 18333 ||||| || || ||| || || || || | | ||||||| |||| | | ||| || Sbjct 1362 AATACCTTCCACAGCA-GCAAAGGCAATGATACGTTCAGCATAACTAGCAGTTTCATGGG 1304 Query 18334 CAGTATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAGC 18393 || |||||| | | ||||| || | | | ||| || | |||| | || Sbjct 1303 CA--ATCCATCTCAGAGCCCAGTCAGCCTTCTTTTTGACACAAGGCAAGGTCTCAACGGC 1246 Query 18394 ATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATA 18453 ||| |||| || || ||||| || ||| | || || |||| ||| | ||| || Sbjct 1245 ATTGAACAGTCTATTTTGTTCTTCAGAGTCTCTGATGTAGGTGTTGATGAGTAAACTGTA 1186 Query 18454 CATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGG 18513 ||||||| || || ||||||| || || || |||| |||||| |||| || || || Sbjct 1185 CATTTCACTGTGGATATTTTCCATTGCAATTTGGAAACCATAAAAGCATCTTGCTTCTGG 1126 Query 18514 ATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGA 18573 | ||||| || | ||||| || || | ||| |||||||| || || |||| || Sbjct 1125 AACTTGAACTTCTTGGCAGAATCTCTCGACAAGATTTTCATTAACAATCCCATCAGAAGC 1066 Query 18574 TGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTCCA 18633 ||||||||||||| |||| |||||||||| | || | |||||| || || | ||| Sbjct 1065 AGCGAAAAATGCCAGCACATGGGAAATGAAATGTCTCTCCTCATCCTTAAGTTTATCCCA 1006 Query 18634 TTCATCTATATC 18645 ||| ||| ||| Sbjct 1005 GTCACCTAAATC 994 >seq2732657 Length=3626 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | ||||| | || |||||||| || ||| | || || || ||| Sbjct 2689 ATGCAGATCTTTGTGAAAACCCTCACAGGAAAAACCATAACACTTGAGGTTGAGCCATCT 2630 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| ||| || |||| ||| || |||||||| |||||||| ||||| || ||| Sbjct 2629 GATACTATTGAAAATGTTAAAACTAAGATCCAAGATAAGGAAGGCATCCCTCCTGATCAA 2570 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| ||| ||||||||||| |||||| | || || || ||||| ||| Sbjct 2569 CAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAAT 2510 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || ||| | ||||| |||||||| | || | ||||| ||| Sbjct 2509 ATCCAGAAGGAGTCCACGCTCCATTTAGTACTCAGGCTCAGAGGTGGT 2462 >seq2750648 Length=12224 Score = 113 bits (124), Expect = 6e-20 Identities = 169/237 (71%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 155815 GTAATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCG 155874 ||||||| |||||||||| | |||||| | ||||| || || ||||| ||||||| | Sbjct 10817 GTAATAA--TGCAAATATTCGTAAAAACACTCACTGGTAAGACAATTACTATAGAAGTAG 10874 Query 155875 AAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTC 155934 || || | || ||| | ||| | ||||||||||| |||||||| || |||| Sbjct 10875 AATCGGGAGAGACAATAGAAAAACTTAAACAAAAAATACAAGACAAAGAAGGTATTCCTC 10934 Query 155935 CAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTAT--C 155992 | || ||||| |||| |||| |||||||| || | ||||||| | || | ||| | Sbjct 10935 CCGATCAACAGCGATTAATTTTCGCCGGTAAACAATTAGAAGATA--ATAAATGTATTAC 10992 Query 155993 AGATTATAATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 |||||||| || ||||| | || ||||||| || || ||| | ||||| || Sbjct 10993 TGATTATAACATTCAAAAAGAATCTACAATTCATTTGGTTTTGAGACTTAGAGGGGG 11049 >seq2442759 Length=1285 Score = 102 bits (112), Expect = 1e-16 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || ||| | || ||| | ||||| || || ||||| | || || || | Sbjct 316 AACATGCAGATCTTTGTGAAGACACTCACTGGGAAGACCATTACCCTTGAGGTAGAGCCT 257 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || || | || ||| || || || || |||||||| || ||||| || || || Sbjct 256 TCAGACACCATCGAAAATGTAAAGGCAAAGATCCAAGATAAGGAGGGCATTCCACCCGAC 197 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || || || ||||| | ||| || |||||||| |||||| | | || || |||||||| Sbjct 196 CAGCAGAGGTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGCACATTGTCAGATTAC 137 Query 156000 AATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || || || | || |||||||| || | ||||||||||| ||| Sbjct 136 AACATCCAGAAGGAATCTACACTTCATTTGGTCCTTAGATTAAGAGGTGGT 86 >seq642385 Length=370 Score = 89.7 bits (98), Expect = 7e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 155907 AAAATACAAGATAAAGAAGGCATACCTCCAGAACAACAAAGATTGATTTATGCCGGTAAG 155966 || || |||||||| ||||| || || ||||| ||||| || ||||| | ||| || ||| Sbjct 182 AAGATCCAAGATAAGGAAGGGATCCCCCCAGACCAACAGAGGTTGATCTTTGCTGGAAAG 123 Query 155967 CAGCTCGAAGATACCAGAACTTTATCAGATTATAATATATCCAAAGAGGCGACGCTTCAT 156026 ||||| |||||| | | || || ||||| || || || || || | || || ||| Sbjct 122 CAGCTGGAAGATGGCCGCACATTGTCAGACTACAACATCCAGAAGGAATCTACACTCCAT 63 Query 156027 TTAGTGTTAAGATTAAGAGGCGGT 156050 || || | ||||||||||| ||| Sbjct 62 TTGGTCCTTAGATTAAGAGGTGGT 39 >seq1400646 Length=492 Score = 87.8 bits (96), Expect = 3e-12 Identities = 119/165 (72%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 155815 GTAATAAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCG 155874 ||||||| |||||||||| | |||||| | ||||| || || |||| ||||||| | Sbjct 170 GTAATAA--TGCAAATATTCGTAAAAACACTCACTGGTAAGACAATTAATATAGAAGTAG 113 Query 155875 AAGATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTC 155934 ||| | || || ||| | ||| | |||||||||| |||| ||| || |||| Sbjct 112 AAGCGGGAAAGAAAATAGAAAAACTTAAACAACAAATACAAGACAAAGTAGGTATTCCTC 53 Query 155935 CAGAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATA 155979 | || ||||| |||| |||| |||||||| || | ||||||| Sbjct 52 CCGATCAACAGCGATTAATTTTCGCCGGTAAACAATTAGAAGATA 8 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 706707386339200