Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2732095 138 3e-27 seq2730651 100 8e-16 seq2735738 93.3 1e-13 seq2174815 93.3 1e-13 >seq2732095 Length=3591 Score = 138 bits (152), Expect = 3e-27 Identities = 323/470 (69%), Gaps = 28/470 (6%) Strand=Plus/Plus Query 133202 GATGAAAAACATTTTATTTCT-ATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGT 133260 || || | |||||| ||||| ||| | | || ||||| ||||| |||||| ||||| Sbjct 1024 GAGGAGAGACATTTCATTTCCCATG-TGCTGGCATTTTTCGCTGCTTCTGATGGGATTGT 1082 Query 133261 TCTTGAAAATTTAGGAACACGGTTTATGGGA-GAAGTTCAACTGGCCGAAGCCCGTGCCT 133319 | ||||||| | | | | || || | ||||||||| | | ||||| | || Sbjct 1083 TAATGAAAATCTTGTCG-AGAGATTCTGCCAAGAAGTTCAAGTTCCAGAAGCAAGATGCT 1141 Query 133320 TTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACAT----ATTCTACTCTA 133375 ||||||| | || ||||| |||||||||||||| | | | || | | ||||| Sbjct 1142 TTTATGGTTTCCAAATTGCAATGGAAAATATCCA--CAGTGAAATGTACAGTTTACTC-- 1197 Query 133376 ATTGATACTTACATCAAAGATACCGTCCAGAAGCACAA---ACTATTCAACGCCATTAGC 133432 || | || |||||| ||| || | |||| || || ||| ||||| ||| || | Sbjct 1198 ATCAACACCTACATC--AGAGACTCTGAAGAA-CAAAATAGACTGTTCAATGCCGTT-GA 1253 Query 133433 GA-ATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGAT---CCAGGACAA 133488 || || |||||| | |||||||| ||||||||||| | | |||||| ||| || | Sbjct 1254 GACCTTGCCTTGTGTCAAAAAGAAGGCTGACTGGGCTCTGAGATGGATTGCCCATGAAA- 1312 Query 133489 GCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAG 133548 ||| |||| |||| ||| || |||| ||||||| || || || ||||| ||||| Sbjct 1313 --CTGCTAGTTATGCTGAACGTATCATTGCCTTTGCTGCTGTGGAAGGTATTTTCTTCAG 1370 Query 133549 TGGTGCGTTCTGCT-CTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTT 133607 ||| | || |||| | || |||||||| || || ||||| | | ||||| || | Sbjct 1371 CGGTTCCTT-TGCTGCGATCTTTTGGCTCAAGAAACGTGGCCTGATGCCTGGTCTTACCT 1429 Query 133608 TTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGCC 133657 || || ||| | || || ||||| || | |||||||| || |||||| Sbjct 1430 TTAGCAATGAATTAATCTCCAGGGATGAAGGTCTTCACACTGACTTTGCC 1479 >seq2730651 Length=3516 Score = 100 bits (110), Expect = 8e-16 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 252472 TCCATAAGACGAGTATCAACAAGCGGTCTCATCGGGTAAGATAGAACATATGCTGTCTTA 252531 |||||| |||||| |||||| ||| || || ||| | | |||| || || Sbjct 500 TCCATAGAACGAGTTGTAACAAGTGGTTTCTGAGGATAAAACAATACATGAGCAAGGGTA 441 Query 252532 TCCATCCTATTATCATAATTTGTAACATACATACCAAGCGCCTGCTTTCCCATAGCACTC 252591 ||||| | | || ||||||||| || | ||| | || ||||| |||||||||||| Sbjct 440 TCCATTCGAACATGGAAATTTGTAATGTAGACACCCATAGCTTGCTTACCCATAGCACTC 381 Query 252592 TGGTAAGTATTTCTGGGAGACTGATTGTTTTCCGGGAAAGGAATGCATGATGCTACA-AC 252650 |||||||| || | |||| ||| |||| || ||||| |||||| ||||| ||| || Sbjct 380 TGGTAAGTGTTACGGGGACTCTGGTTGTGATCAGGGAATGGAATGATAGATGC-ACATAC 322 Query 252651 ACCGAAGATAGTGCTTGGGTGAATTTCACAGTGACTGTA 252689 ||| | || || ||| ||||||||||| || |||| Sbjct 321 ACCAAGTATCATGGCTGGATGAATTTCACAATGTGTGTA 283 >seq2735738 Length=3827 Score = 93.3 bits (102), Expect = 1e-13 Identities = 190/274 (69%), Gaps = 10/274 (4%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| |||||| ||||| || ||||| || || ||| | |||||||| || ||| Sbjct 3133 TCCATAGCCTTGATCAAACGTCGTTGAATGTAGCCTGTTTCGGCGGTTTTTACGGCCGTA 3192 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTA-GCCC 302693 || || ||||| ||||||| ||||| || || ||| | | || || |||| | || Sbjct 3193 TCGATCAGACCCTCACGACCTCCCATGGCGTGAAAGTAGAATTCAGAGGG-CGTAAGACC 3251 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGT 302750 | | ||||| |||| ||||| || | | ||| || || |||| || ||| | Sbjct 3252 GGCCAAGTAGGAGTTCTCGACGAAGCCTCTGGACTCAGGACCGTAATCATC---CTTAAT 3308 Query 302751 AAAGTGTGGCAGGGTCCTGTT-CTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCT 302809 || || || || ||||| || || | | ||| | ||||| | ||| || || ||||||| Sbjct 3309 GAAATGGGGTAGAGTCCTCTTTCTGAAA-CCGAAGGGGATTCTCTTACCCTCGACGTTCT 3367 Query 302810 GCTGTCCCAGGCACGAAATCATCTGCGAAATATT 302843 ||||||| | || | ||| | ||| || || || Sbjct 3368 GCTGTCCTACACAAGCAATAACCTGAGAGATGTT 3401 >seq2174815 Length=883 Score = 93.3 bits (102), Expect = 1e-13 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||||| | ||||||||| || ||||||||| | |||||||| || ||| Sbjct 183 TCCATAGCTTTGATAAGACGACGCTGGATGTAACCAGTTTCGGCCGTTTTTACGGCAGTA 124 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 ||||| | ||| |||||||||||||||| |||||| | | ||| ||| || || Sbjct 123 TCAATCAAACCTTCACGACCACCCATAGCGTGGAAGTAGAATTCTGAAGGTGTCAGACCA 64 Query 302695 CCAATAAAGGAGCTCTCAACGAAACC 302720 ||| | ||| |||| |||||||| Sbjct 63 GCAAGGTAAGAGTTCTCCACGAAACC 38 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1419945600093944