Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2595133 111 2e-18 seq2605278 105 8e-17 seq498297 102 1e-15 seq2400810 98.7 1e-14 seq1387796 98.7 1e-14 seq1603026 96.9 4e-14 seq2003437 86.0 7e-11 >seq2595133 Length=1749 Score = 111 bits (122), Expect = 2e-18 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| ||||| || ||| | || || || || |||||||| || || | || Sbjct 514 GCTTGGCGAGTTCACCAGGCAACAGAAGACGAACTGCTGTCTGGATTTCCCGAGAAGTGA 455 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||| |||||||| |||||| | ||||||| || | | Sbjct 454 TGGTTGAGCGCTTGTTGTAGTGAGCCAGACGAGAGGCCTCAGCAGCGATGCGCTCAAAGA 395 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| || || || |||||||||| ||||| | |||| |||||| || ||||| | Sbjct 394 TGTCATTCACGAAAGAGTTCATGATAGACATGGCCTTGGAGGAGATACCGGTATCGGGAT 335 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | || ||||| | ||||||||||||| Sbjct 334 GAACTTGCTTCAACACCTTGTAGATG 309 >seq2605278 Length=1798 Score = 105 bits (116), Expect = 8e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| ||||| || ||| | || || || || |||||||| || || | || Sbjct 1389 GCTTGGCGAGTTCACCAGGCAACAGAAGACGAACTGCTGTCTGGATTTCCCGAGAAGTGA 1448 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||| |||| ||| |||||| | ||||||| || | | Sbjct 1449 TGGTTGAGCGCTTGTTGTAGTGAGCCAAACGAGAGGCCTCAGCAGCGATGCGCTCAAAGA 1508 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| || || || |||||||||| ||||| | |||| |||||| || ||||| | Sbjct 1509 TGTCATTCACGAAAGAGTTCATGATAGACATGGCCTTGGAGGAGATACCGGTATCGGGAT 1568 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | || ||||| | ||||||||||||| Sbjct 1569 GAACTTGCTTCAACACCTTGTAGATG 1594 >seq498297 Length=353 Score = 102 bits (112), Expect = 1e-15 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| ||||| | ||| | || || || || |||||||| || || | || Sbjct 227 GCTTGGCGAGTTCACAAGGCAACAGAAGACGAACTGCTGTCTGGATTTCCCGAGAAGTGA 168 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||| |||||||| |||||| | ||||||| || | | Sbjct 167 TGGTTGAGCGCTTGTTGTAGTGGGCCAGACGAGAGGCCTCAGCAGCGATGCGCTCAAAGA 108 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| || || || |||||||||| ||||| | |||| |||| | || ||||| | Sbjct 107 TGTCATTCACGAAAGAGTTCATGATAGACATGGCCTTGGAGGAGTTACCGGTATCGGGAT 48 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | || ||||| | ||||||||||||| Sbjct 47 GAACTTGCTTCAACACCTTGTAGATG 22 >seq2400810 Length=1203 Score = 98.7 bits (108), Expect = 1e-14 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 1254410 GCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTT 1254469 ||||||||| |||| |||||||| |||||| | ||||||| || | ||||| || Sbjct 1177 GCGCTTGTTGTAGTGAGCCAGACGAGAGGCCTCAGCAGCGATGCGCTCAAAGATGTCATT 1118 Query 1254470 GACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1254529 || || |||||||||| ||||| | |||| |||||| || ||||| || || || Sbjct 1117 CACGAAAGAGTTCATGATAGACATGGCCTTGGAGGAGATACCGGTATCGGGATGAACTTG 1058 Query 1254530 CTTGAGCACCTTGTAGATG 1254548 ||| | ||||||||||||| Sbjct 1057 CTTCAACACCTTGTAGATG 1039 >seq1387796 Length=489 Score = 98.7 bits (108), Expect = 1e-14 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 1254410 GCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTT 1254469 ||||||||| |||| |||||||| |||||| | ||||||| || | ||||| || Sbjct 157 GCGCTTGTTGTAGTGAGCCAGACGAGAGGCCTCAGCAGCGATGCGCTCAAAGATGTCATT 98 Query 1254470 GACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCACCTG 1254529 || || |||||||||| ||||| | |||| |||||| || ||||| || || || Sbjct 97 CACGAAAGAGTTCATGATAGACATGGCCTTGGAGGAGATACCGGTATCGGGATGAACTTG 38 Query 1254530 CTTGAGCACCTTGTAGATG 1254548 ||| | ||||||||||||| Sbjct 37 CTTCAACACCTTGTAGATG 19 >seq1603026 Length=547 Score = 96.9 bits (106), Expect = 4e-14 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| ||||| || ||| | || || || || |||||||| || || | || Sbjct 536 GCTTGGCGAGTTCACCAGGCAACAGAAGACGAACTGCTGTCTGGATTTCCCGAGAAGTGA 477 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| |||| |||||||| ||| || | ||||||| || | | Sbjct 476 TGGTTGAGCGCTTGTTGTAGTGAGCCAGACGAGAGGCGTCAGCAGCGATGCGCTCAAAGA 417 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| || || | |||||||||| | ||| | ||||| |||||| || ||||| | Sbjct 416 TGTCATTCACGAGAGAGTTCATGATAGTCATGGCCTTGTAGGAGATACCGGTATCGGGAT 357 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 || ||||| | ||||||||||||| Sbjct 356 AAACTTGCTTCAACACCTTGTAGATG 331 >seq2003437 Length=735 Score = 86.0 bits (94), Expect = 7e-11 Identities = 103/138 (75%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 1592165 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAA--GCCTCTGCTCGATC 1592222 ||||| ||||| || || || || ||||| ||| | || ||||| |||||| | ||| Sbjct 430 ACCCTGTTTGAATTAATTCTTGCTGCCAATTACTTGGATATCAAAGGCCTCT--TAGATG 487 Query 1592223 TTGGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGA 1592282 | ||||| |||| |||||||||||||||||||| | ||||| || || || || | Sbjct 488 TCACATGCAAAACTGTTGCCAACATGATCAAGGGCAAAACTCCCGATGAAATTCGAAAAA 547 Query 1592283 CCTTTAACATCAAGTACG 1592300 | || || |||||| ||| Sbjct 548 CATTCAATATCAAGAACG 565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 5881402891695704