Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq2750648 141 8e-29 seq2732657 138 1e-27 seq2442759 134 1e-26 seq642385 116 3e-21 seq2683473 100 2e-16 seq2129313 100 2e-16 seq1400646 93.3 4e-14 >seq2750648 Length=12224 Score = 141 bits (156), Expect = 8e-29 Identities = 161/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| || || ||||| || ||||| | ||||||||| | Sbjct 10823 ATGCAAATATTCGTAAAAACACTCACTGGTAAGACAATTACTATAGAAGTAGAATCGGGA 10882 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| |||||| | |||||||| || |||||||||||||| || |||||||||||| Sbjct 10883 GAGACAATAGAAAAACTTAAACAAAAAATACAAGACAAAGAAGGTATTCCTCCCGATCAA 10942 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || || || || ||||| ||||| | || ||| | | || | ||||||||| Sbjct 10943 CAGCGATTAATTTTCGCCGGTAAACAATTAGAAGATAATAAATGTATTACTGATTATAAC 11002 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGA 24919 |||||||| ||||| ||| | || ||||| ||| || Sbjct 11003 ATTCAAAAAGAATCTACAATTCATTTGGTTTTGAGA 11038 >seq2732657 Length=3626 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || | ||||| ||| || | Sbjct 2005 ATGCAGATCTTCGTGAAGACCCTCACTGGAAAGACCATCACTTTGGAAGTTGAACCCTCT 1946 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| |||||| ||||||||| ||||| || || || || || ||||| Sbjct 1945 GACACAATTGAAAATGTAAAAGCAAAGATCCAGGACAAGGAGGGCATTCCACCAGATCAG 1886 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| ||| | | | |||||||||| ||| Sbjct 1885 CAGAGACTGATCTTTGCAGGCAAGCAGCTGGAAGATGGGCGTACATTGTCAGATTACAAC 1826 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| |||||||| || || || ||||| Sbjct 1825 ATTCAGAAGGAATCTACCCTTCATTTGGT 1797 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| ||||||| || || || || || || || | ||||||||| | | Sbjct 2917 ATGCAGATATTTGTTAAAACCCTCACTGGAAAGACCATCACCTTGGAAGTAGAACCATCT 2858 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| || ||| ||||||||||| || ||||| || ||||| || || Sbjct 2857 GACACCATTGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGTATTCCTCCAGACCAG 2798 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || ||||||||||| ||| | | ||||||| || || Sbjct 2797 CAGAGGCTGATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACATTGTCAGACTACAAT 2738 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| |||||||| || || |||||||| | ||||| | || || Sbjct 2737 ATTCAGAAGGAATCTACTCTTCACTTGGTACTAAGATTGAGAGGTGG 2691 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || |||||| | | Sbjct 3601 ATGCAGATCTTCGTCAAGACACTCACAGGAAAGACCATAACCCTTGAGGTAGAACCATCA 3542 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| ||||||||||| || ||||| || ||||| || ||| Sbjct 3541 GATACCATTGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGTATTCCTCCAGACCAA 3482 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACA-TGTCAGATTAT 24880 || | ||||||||||| || || ||| |||| ||| ||| ||| |||| ||||| Sbjct 3481 CAGAGGTTGATCTTTGCTGGAAAGCAGTTGGAAGATGGTCG---TACATTGTCTGATTAC 3425 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||||| |||||||| || || ||| | || | |||||| | || || Sbjct 3424 AACATTCAGAAGGAATCTACTCTTCACCTTGTACTCCGATTGAGAGGTGG 3375 Score = 116 bits (128), Expect = 3e-21 Identities = 157/213 (74%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || ||||| || || || || || || |||| | Sbjct 2689 ATGCAGATCTTTGTGAAAACCCTCACAGGAAAAACCATAACACTTGAGGTTGA-GCCATC 2631 Query 24764 -GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | |||| || ||| ||||||||||| || ||||| || ||||| ||||| Sbjct 2630 TGATACTATTGAAAATGTTAAAACTAAGATCCAAGATAAGGAAGGCATCCCTCCTGATCA 2571 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGAT--TCGAGAAACA-TGTCAGATTA 24879 ||| | ||||| ||||| || || |||||||| ||| ||| ||| |||| ||||| Sbjct 2570 ACAGAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGTCG---TACATTGTCTGATTA 2514 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGT 24912 || || || ||||| || || || || || || Sbjct 2513 CAATATCCAGAAGGAGTCCACGCTCCATTTAGT 2481 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| || || || || || || || || || || ||| | | Sbjct 3145 ATGCAGATCTTTGTGAAAACCCTCACAGGAAAGACCATCACACTTGAGGTTGAACCATCA 3086 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| ||||||||||| || ||||| || || || || || Sbjct 3085 GATACCATTGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCAG 3026 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | |||||||||| || ||||| ||||| ||| | | |||| || || ||| Sbjct 3025 CAAAGGCTGATCTTTGCAGGTAAACAACTGGAAGATGGCCGCACATTGTCTGACTACAAC 2966 Query 24884 ATTCAAAAGGAATCGACACTACAC 24907 ||||| |||||||| || || ||| Sbjct 2965 ATTCAGAAGGAATCTACTCTTCAC 2942 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || | ||||||||| | | Sbjct 2233 ATGCAGATCTTCGTGAAGACACTTACTGGAAAGACCATCACATTGGAAGTAGAACCATCT 2174 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | |||| || ||| ||||||||||| || ||||| || || || || || Sbjct 2173 GATACCATTGAAAATGTCAAAGCCAAGATCCAAGATAAGGAAGGTATCCCCCCAGACCAG 2114 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || || ||| |||| ||| | | |||| || || || Sbjct 2113 CAGAGATTGATCTTTGCTGGTAAGCAGTTGGAAGATGGTCGTACTTTGTCTGACTACAAT 2054 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| |||||||| ||||| || ||||| Sbjct 2053 ATTCAGAAGGAATCTACACTCCATTTGGT 2025 >seq2442759 Length=1285 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || || || || || ||||| || || ||||| | | Sbjct 313 ATGCAGATCTTTGTGAAGACACTCACTGGGAAGACCATTACCCTTGAGGTAGAGCCTTCA 254 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | |||| ||||| |||||||||||| || || || || || ||||| || Sbjct 253 GACACCATCGAAAATGTAAAGGCAAAGATCCAAGATAAGGAGGGCATTCCACCCGACCAG 194 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || || |||||||| ||| | | |||||||||| ||| Sbjct 193 CAGAGGTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGCACATTGTCAGATTACAAC 134 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || |||||||| ||||| || ||||| Sbjct 133 ATCCAGAAGGAATCTACACTTCATTTGGT 105 >seq642385 Length=370 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || ||||| || || || ||||||| | | ||| | | Sbjct 266 ATGCAGATCTTCGTCAAGACACTAACAGGAAAGACCCTTACGCTTGTACGAGATCCATCA 207 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| || | |||| || || ||||||||||| || ||||| || || || || ||| Sbjct 206 GACTCAATTGAAATTGTGAAGGCCAAGATCCAAGATAAGGAAGGGATCCCCCCAGACCAA 147 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||| || || |||||||| ||| | | ||||||| || ||| Sbjct 146 CAGAGGTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGCACATTGTCAGACTACAAC 87 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || || |||||||| ||||| || ||||| Sbjct 86 ATCCAGAAGGAATCTACACTCCATTTGGT 58 >seq2683473 Length=2397 Score = 100 bits (110), Expect = 2e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 139123 TATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTG 139182 || || |||||||| | || | |||| ||||||||| ||||| ||||| ||||| ||| Sbjct 1593 TACTCAACAATTTCTGTGCAGAGATTAGAACACTTGATGGTACCCAAATTCTGTTGGTTG 1652 Query 139183 CTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCAC 139235 || |||| || || ||||||||||| ||||| || || || ||||||||||| Sbjct 1653 CTCTTTCTATTGCATGCATCTTTGTATAGCATGTATGGCGTTCCAGTTTCCAC 1705 >seq2129313 Length=838 Score = 100 bits (110), Expect = 2e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 139123 TATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTG 139182 || || |||||||| | || | |||| ||||||||| ||||| ||||| ||||| ||| Sbjct 802 TACTCAACAATTTCTGTGCAGAGATTAGAACACTTGATGGTACCCAAATTCTGTTGGTTG 743 Query 139183 CTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCAC 139235 || |||| || || ||||||||||| ||||| || || || ||||||||||| Sbjct 742 CTCTTTCTATTGCATGCATCTTTGTATAGCATGTATGGCGTTCCAGTTTCCAC 690 >seq1400646 Length=492 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | ||||| || || ||||| || |||| | ||||||||||| Sbjct 164 ATGCAAATATTCGTAAAAACACTCACTGGTAAGACAATTAATATAGAAGTAGAAGCGGGA 105 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 | | | |||||| | |||||| | || |||||||||| ||| || |||||||||||| Sbjct 104 AAGAAAATAGAAAAACTTAAACAACAAATACAAGACAAAGTAGGTATTCCTCCCGATCAA 45 Query 24824 CAACGTTTGATCTTTGCCGGGAAACA 24849 || || || || || ||||| ||||| Sbjct 44 CAGCGATTAATTTTCGCCGGTAAACA 19 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434428365911360