Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq2750648 168 1e-36 seq2732657 123 4e-23 seq1400646 109 8e-19 seq2442759 91.5 2e-13 >seq2750648 Length=12224 Score = 168 bits (186), Expect = 1e-36 Identities = 175/227 (77%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||||||| |||||||| | || || || ||||||||||| || |||||| | Sbjct 10824 TGCAAATATTCGTAAAAACACTCACTGGTAAGACAATTACTATAGAAGTAGAATCGGGAG 10883 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || |||| | ||| | ||||||||| |||||||| ||||| |||||||||| Sbjct 10884 AGACAATAGAAAAACTTAAACAAAAAATACAAGACAAAGAAGGTATTCCTCCCGATCAAC 10943 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGT-TAACAGATTATAAT 146210 | || | ||||| || |||||||||||||| ||||||| || || | || |||||||| Sbjct 10944 AGCGATTAATTTTCGCCGGTAAACAATTAGAAGATAATA-AATGTATTACTGATTATAAC 11002 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 || ||||||||||| || || ||||| || || || | ||||| || Sbjct 11003 ATTCAAAAAGAATCTACAATTCATTTGGTTTTGAGACTTAGAGGGGG 11049 >seq2732657 Length=3626 Score = 123 bits (136), Expect = 4e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||| | ||||||||||| || || |||| || || | | Sbjct 2688 TGCAGATCTTTGTGAAAACCCTCACAGGAAAAACCATAACACTTGAGGTTGAGCCATCTG 2629 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||||||| ||||||| |||| ||| || ||| ||| |||||||| || || ||||||| Sbjct 2628 ATACTATTGAAAATGTTAAAACTAAGATCCAAGATAAGGAAGGCATCCCTCCTGATCAAC 2569 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | |||||||| ||||| || | || ||| | | || || | ||||| |||| Sbjct 2568 AGAGGTTGATTTTTGCTGGTAAGCAGCTGGAAGATGGTCGTACATTGTCTGATTACAATA 2509 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || || || || || ||||||||||| | | | ||||| |||| Sbjct 2508 TCCAGAAGGAGTCCACGCTCCATTTAGTACTCAGGCTCAGAGGTGGTA 2461 Score = 113 bits (124), Expect = 7e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 |||| || || | ||||| | |||||||| || || || |||| || |||| || | Sbjct 3144 TGCAGATCTTTGTGAAAACCCTCACAGGAAAGACCATCACACTTGAGGTTGAACCATCA- 3086 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| ||||||| ||| ||| || ||| ||| ||||| ||||| || || || Sbjct 3085 GATACCATTGAAAATGTCAAAGCTAAGATCCAAGATAAGGAAGGTATTCCCCCAGACCAG 3026 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||||| || || ||||||||||||||| | || ||| | || || | || || || Sbjct 3025 CAAAGGCTGATCTTTGCAGGTAAACAACTGGAAGATGGCCGCACATTGTCTGACTACAAC 2966 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 || || || ||||| ||| | || | ||| | ||| | ||||| |||| Sbjct 2965 ATTCAGAAGGAATCTACTCTTCACCTTGTACTCCGACTTAGAGGTGGTA 2917 Score = 109 bits (120), Expect = 8e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| | |||||||| || || || | || || |||| | | Sbjct 3372 TGCAAATTTTTGTCAAAACCCTCACAGGAAAGACCATCACATTGGAAGTCGAACCTTCTG 3313 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | ||||| || || || || ||| |||||||||||||| || |||| Sbjct 3312 ATACCATTGAGAATGTGAAGGCAAAGATTCAGGATAAGGAAGGCATTCCACCAGACCAAC 3253 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | |||||||| || || || || || ||| | | || || | ||||| || | Sbjct 3252 AGAGGTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGTCGTACCTTGTCTGATTACAACA 3193 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || |||||||| || | ||||| || | ||||| ||||| |||| Sbjct 3192 TCCAGAAAGAATCCACACTTCATTTGGTGCTTCGATTGAGAGGTGGTA 3145 Score = 87.8 bits (96), Expect = 3e-12 Identities = 144/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | || || | || ||||| || || ||| | || || |||| | Sbjct 2004 TGCAGATCTTCGTGAAGACCCTCACTGGAAAGACCATCACTTTGGAAGTTGAACCCTCTG 1945 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||||||| || || || || || ||||||||||| ||||| | Sbjct 1944 ACACAATTGAAAATGTAAAAGCAAAGATCCAGGACAAGGAGGGCATTCCACCAGATCAGC 1885 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | ||||| || |||||||| || || | || ||| | || || ||||||| || | Sbjct 1884 AGAGACTGATCTTTGCAGGCAAGCAGCTGGAAGATGGGCGTACATTGTCAGATTACAACA 1825 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | || || ||||| || | ||||| || Sbjct 1824 TTCAGAAGGAATCTACCCTTCATTTGGT 1797 Score = 86.0 bits (94), Expect = 1e-11 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | ||||||||||||||||| | || || || | | | Sbjct 2460 TGCAAATTTTTGTGAAGACCCTTACAGGAAAAACAATTACCCTAGAAGTGGAGCCTTCAG 2401 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| | |||||||| || || ||| || ||||| || || || || || | Sbjct 2400 ACACCATTGAGAATGTAAAGGCAAAGATTCAAGACAAGGAAGGTATCCCTCCAGACCAGC 2341 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || || |||||||| || || | || ||| | | || | | || || |||| Sbjct 2340 AGAGGCTGATCTTTGCAGGCAAGCAGCTTGAAGATGGTCGCACTCTGTCTGACTACAATA 2281 Query 146212 TACAAAAAGAATCGACTATCCATTTAG-TATTACGATTAAGAGGAGGTA 146259 | || || ||||| || ||||||||| | ||| | || ||||| |||| Sbjct 2280 TTCAGAAGGAATCTACACTCCATTTAGTTCTTAGGCTT-AGAGGTGGTA 2233 >seq1400646 Length=492 Score = 109 bits (120), Expect = 8e-19 Identities = 123/161 (76%), Gaps = 4/161 (2%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACAT--AA 146089 ||||||||||| |||||||| | || || || ||||||| ||| || |||||| || Sbjct 163 TGCAAATATTCGTAAAAACACTCACTGGTAAGACAATTAATATAGAAGTAGAAGCGGGAA 104 Query 146090 CGATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCA 146149 || | || ||| | |||| || ||| ||||| |||| ||| ||||| |||||||| Sbjct 103 AGAAAATAGAAAAACT-TAAACAACAAA-TACAAGACAAAGTAGGTATTCCTCCCGATCA 46 Query 146150 ACAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATA 146190 ||| || | ||||| || |||||||||||||| ||||||| Sbjct 45 ACAGCGATTAATTTTCGCCGGTAAACAATTAGAAGATAATA 5 >seq2442759 Length=1285 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | || ||| | || || || || ||||| |||| ||||| | | | Sbjct 312 TGCAGATCTTTGTGAAGACACTCACTGGGAAGACCATTACCCTTGAGGTAGAGCCTTCAG 253 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || |||||||||| || || ||| ||| || |||||||||||||| || | Sbjct 252 ACACCATCGAAAATGTAAAGGCAAAGATCCAAGATAAGGAGGGCATTCCACCCGACCAGC 193 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || | || ||||| || || || | || ||| | || || ||||||| || | Sbjct 192 AGAGGTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGCCGCACATTGTCAGATTACAACA 133 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | || || ||||| || | ||||| || | |||||||||| |||| Sbjct 132 TCCAGAAGGAATCTACACTTCATTTGGTCCTTAGATTAAGAGGTGGTA 85 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 759134933119040