Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq2732657 152 4e-32 seq2750648 138 8e-28 seq2442759 134 1e-26 >seq2732657 Length=3626 Score = 152 bits (168), Expect = 4e-32 Identities = 172/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-C 29618 || || ||||| | || ||||| ||||| || ||||| || ||||| || || || | | Sbjct 2691 CCACCTCTCAATCTTAGTACCAAGTGAAGAGTAGATTCCTTCTGAATATTGTAGTCTGAC 2750 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 |||| |||| ||| || || ||||| |||||| | |||| || ||||| || || || Sbjct 2751 AATG-TGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGAGG 2809 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 |||||| || || ||||| | || ||||||| |||| | |||||||| ||||||| Sbjct 2810 AATACCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGTTCTAC 2869 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| | || || || || ||||| | ||||||||||||||||||||| Sbjct 2870 TTCCAAGGTGATGGTCTTTCCAGTGAGGGTTTTAACAAATATCTGCAT 2917 Score = 143 bits (158), Expect = 2e-29 Identities = 161/213 (76%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAGAATC 29633 || ||||||||||| || ||||| || |||||||| ||||| | |||| || || ||| Sbjct 1794 AGGACCAAATGAAGGGTAGATTCCTTCTGAATGTTGTAATCTGACAAT-GTACGCCCATC 1852 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || ||||| ||| | |||| ||| |||||||| || ||||| ||||| ||||| Sbjct 1853 TTCCAGCTGCTTGCCTGCAAAGATCAGTCTCTGCTGATCTGGTGGAATGCCCTCCTTGTC 1912 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | ||| ||| ||| |||| | |||||||| |||| ||||| | ||| || || Sbjct 1913 CTGGATCTTTGCTTTTACATTTTCAATTGTGTCAGAGGGTTCAACTTCCAAAGTGATGGT 1972 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| | ||| || || || |||||||| Sbjct 1973 CTTTCCAGTGAGGGTCTTCACGAAGATCTGCAT 2005 Score = 138 bits (152), Expect = 8e-28 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || ||||| || |||||||||||||| ||||||||||| || ||||| ||||| | Sbjct 3147 CCACCTCTCAATCGAAGCACCAAATGAAGTGTGGATTCTTTCTGGATGTTGTAATCAGAC 3206 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| ||| ||| || | || ||||||||| | ||||| || || || || || ||| Sbjct 3207 AAGGTACGACCATCTTCCAACTGCTTGCCAGCAAAAATCAACCTCTGTTGGTCTGGTGGA 3266 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || || || || || || ||| |||| || ||| | || | || |||||| |||| || Sbjct 3267 ATGCCTTCCTTATCCTG-AATCTTTGCCTTCACATTCTCAATGGTATCAGAAGGTTCGAC 3325 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||| | || || || || || || | |||||| ||||| || ||||| Sbjct 3326 TTCCAATGTGATGGTCTTTCCTGTGAGGGTTTTGACAAAAATTTGCAT 3373 >seq2750648 Length=12224 Score = 138 bits (152), Expect = 8e-28 Identities = 179/244 (73%), Gaps = 4/244 (2%) Strand=Plus/Minus Query 29547 ATTTTATCGTTGTC-CTCCCCTCAAA--CGCAGCACCAAATGAAGCGTGGATTCTTTTTG 29603 |||||| ||||| | |||||| || | || |||||||||| || ||||||||||| Sbjct 11064 ATTTTAA-GTTGTATCCCCCCTCTAAGTCTCAAAACCAAATGAATTGTAGATTCTTTTTG 11006 Query 29604 AATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCT 29663 |||||||||||| | ||| | ||| || | |||||| || || | || |||| Sbjct 11005 AATGTTATAATCAGTAATACATTTATTATCTTCTAATTGTTTACCGGCGAAAATTAATCG 10946 Query 29664 TTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGT 29723 || ||||| || |||||||| ||||||||||||| ||||||||| | |||||| || Sbjct 10945 CTGTTGATCGGGAGGAATACCTTCTTTGTCTTGTATTTTTTGTTTAAGTTTTTCTATTGT 10886 Query 29724 GTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTG 29783 || ||||||||| | ||| || || || ||||| | ||||| || ||||| || Sbjct 10885 CTCTCCCGATTCTACTTCTATAGTAATTGTCTTACCAGTGAGTGTTTTTACGAATATTTG 10826 Query 29784 CATT 29787 |||| Sbjct 10825 CATT 10822 >seq2442759 Length=1285 Score = 134 bits (148), Expect = 1e-26 Identities = 161/216 (75%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-CAATGGTGCGAGAATC 29633 || ||||||||||| || ||||| || || ||||| ||||| | |||| ||||| ||| Sbjct 102 AGGACCAAATGAAGTGTAGATTCCTTCTGGATGTTGTAATCTGACAAT-GTGCGGCCATC 160 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || || |||||| | ||||| || ||||| || || ||||| ||||| || || Sbjct 161 TTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCGGGTGGAATGCCCTCCTTATC 220 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 ||| | ||| || ||| |||| | ||||| ||| | ||||| ||||| || || || Sbjct 221 TTGGATCTTTGCCTTTACATTTTCGATGGTGTCTGAAGGCTCTACCTCAAGGGTAATGGT 280 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || ||||| | || || ||||| |||||||| || Sbjct 281 CTTCCCAGTGAGTGTCTTCACAAAGATCTGCATGTT 316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 372304995010392