Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq2750648 150 2e-31 seq2732657 113 4e-20 seq2442759 104 2e-17 seq1400646 91.5 1e-13 >seq2750648 Length=12224 Score = 150 bits (166), Expect = 2e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 137199 CAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTC 137258 |||||| ||||||||||||||||||||||| ||||| ||||| | || | || Sbjct 11035 CAAAACCAAATGAATTGTAGATTCTTTTTGAATGTTATAATCAGTAATACATTTATTATC 10976 Query 137259 TTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318 ||| | ||||||||| || | || | || || ||||||||||| || ||||||||||| Sbjct 10975 TTCTAATTGTTTACCGGCGAAAATTAATCGCTGTTGATCGGGAGGAATACCTTCTTTGTC 10916 Query 137319 GGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGT 137378 ||||||||||| || | ||| | || ||| | ||||||||| | ||| | || Sbjct 10915 TTGTATTTTTTGTTTAAGTTTTTCTATTGTCTCTCCCGATTCTACTTCTATAGTAATTGT 10856 Query 137379 CTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||| || || | ||||||||||||||||||||| Sbjct 10855 CTTACCAGTGAGTGTTTTTACGAATATTTGCAT 10823 >seq2732657 Length=3626 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262 || ||||||| |||||||| || || ||||||||||| || ||| | | ||||| Sbjct 1797 ACCAAATGAAGGGTAGATTCCTTCTGAATGTTGTAATCTGACAATGTACGCCCATCTTCC 1856 Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322 || || || || ||| ||||||| | |||||||| || || ||||| || ||||| Sbjct 1857 AGCTGCTTGCCTGCAAAGATCAGTCTCTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGG 1916 Query 137323 ATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTG 137382 || ||| ||||| | ||| | ||||| | |||||| ||||| | ||| | ||||| Sbjct 1917 ATCTTTGCTTTTACATTTTCAATTGTGTCAGAGGGTTCAACTTCCAAAGTGATGGTCTTT 1976 Query 137383 CCGGTCAATGTTTTTACGAATATTTGCATA 137412 || || | || || ||||| || |||||| Sbjct 1977 CCAGTGAGGGTCTTCACGAAGATCTGCATA 2006 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 137262 || || |||| |||||||| || || || ||||| || || ||||| ||||| Sbjct 2709 ACCAAGTGAAGAGTAGATTCCTTCTGAATATTGTAGTCTGACAATGTGCGGCCATCTTCC 2768 Query 137263 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 137322 || |||||||||||| ||||||| | ||||| || ||||| || ||||| || || Sbjct 2769 AGCTGTTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATACCTTCCTTATCTTGG 2828 Query 137323 ATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTG 137382 || || ||| | | ||| | ||||| | ||||||||||| | || | ||||| Sbjct 2829 ATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGTTCTACTTCCAAGGTGATGGTCTTT 2888 Query 137383 CCGGTCAATGTTTTTACGAATATTTGCATA 137412 || || | ||||| || ||||| |||||| Sbjct 2889 CCAGTGAGGGTTTTAACAAATATCTGCATA 2918 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 137209 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 137268 |||| |||||||| || || |||||||| || || ||||| ||||| |||||| Sbjct 2943 TGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGACAATGTGCGGCCATCTTCCAGTTGT 3002 Query 137269 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 137328 ||||| ||| ||||||| | |||||| || || || || ||||| || || || || Sbjct 3003 TTACCTGCAAAGATCAGCCTTTGCTGGTCTGGGGGAATACCTTCCTTATCTTGGATCTTA 3062 Query 137329 TGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 137388 ||| | | ||| | || |||| ||||| || |||| || | ||||| || || Sbjct 3063 GCTTTGACATTTTCAATGGTATCTGATGGTTCAACCTCAAGTGTGATGGTCTTTCCTGTG 3122 Query 137389 AATGTTTTTACGAATATTTGCATA 137412 | ||||| || || || |||||| Sbjct 3123 AGGGTTTTCACAAAGATCTGCATA 3146 >seq2442759 Length=1285 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 || |||| ||| | | || ||||||| ||||||||| || || ||||||||||| | Sbjct 87 CCACCTCTTAATCTAAGGACCAAATGAAGTGTAGATTCCTTCTGGATGTTGTAATCTGAC 146 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | ||||| ||||| || || || |||||| |||||| | ||||| ||||| || Sbjct 147 AATGTGCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCGGGTGGA 206 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 ||||| || || || || ||| |||| | ||| | ||||||| || ||||| Sbjct 207 ATGCCCTCCTTATCTTGGATCTTTGCCTTTACATTTTCGATGGTGTCTGAAGGCTCTACC 266 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 |||| || | ||||| || || | ||| || || || || ||||| Sbjct 267 TCAAGGGTAATGGTCTTCCCAGTGAGTGTCTTCACAAAGATCTGCAT 313 >seq1400646 Length=492 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 137257 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 137316 ||||| | ||||||||| || | || | || || ||||||||||| || ||| ||||| Sbjct 10 TCTTCTAATTGTTTACCGGCGAAAATTAATCGCTGTTGATCGGGAGGAATACCTACTTTG 69 Query 137317 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACTTCAACAGTCACC 137376 || |||| |||||| || | ||| | | | | | ||||||||| | | | | Sbjct 70 TCTTGTATTTGTTGTTTAAGTTTTTCTATTTTCTTTCCCGCTTCTACTTCTATATTAATT 129 Query 137377 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 ||||| || || | ||||||||||||||||||||| Sbjct 130 GTCTTACCAGTGAGTGTTTTTACGAATATTTGCAT 164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471745951958400