Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq2732657 197 3e-45 seq2442759 147 4e-30 seq2750648 134 3e-26 seq642385 125 1e-23 seq2408123 91.5 3e-13 seq2713712 84.2 4e-11 >seq2732657 Length=3626 Score = 197 bits (218), Expect = 3e-45 Identities = 181/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | || || ||||| ||||||||||| ||||| ||||| || || | Sbjct 2689 TACCACCTCTCAATCTTAGTACCAAGTGAAGAGTAGATTCCTTCTGAATATTGTAGTCTG 2748 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | || ||||| || ||||| ||||||||||| || || || || ||||||| Sbjct 2749 ACAATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGAG 2808 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||||||||| ||||| ||||| ||||||||||| || ||| ||||||| Sbjct 2809 GAATACCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGTTCTA 2868 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || ||||| || || | || || |||||||||||||| Sbjct 2869 CTTCCAAGGTGATGGTCTTTCCAGTGAGGGTTTTAACAAATATCTGCAT 2917 Score = 192 bits (212), Expect = 1e-43 Identities = 180/229 (79%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| || || || | ||| ||||||||||| ||||| || || ||||||| Sbjct 3373 TACCACCTCTCAATCGGAGTACAAGGTGAAGAGTAGATTCCTTCTGAATGTTGTAATCAG 3432 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||| ||||| | || |||||||||||||| | || ||||| ||||||| Sbjct 3433 ACAATGTACGACCATCTTCCAACTGCTTTCCAGCAAAGATCAACCTCTGTTGGTCTGGAG 3492 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||||||||| ||||| ||||| ||||||||||| ||||| ||||||| Sbjct 3493 GAATACCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCAATGGTATCTGATGGTTCTA 3552 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | ||||| ||||| ||||| | ||||| || || |||||||| Sbjct 3553 CCTCAAGGGTTATGGTCTTTCCTGTGAGTGTCTTGACGAAGATCTGCAT 3601 Score = 183 bits (202), Expect = 6e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| | | ||||| || || || |||||||| ||||| ||||| || |||| Sbjct 2005 TACCGCCTCTAAGCCTGAGAACCAAATGGAGTGTAGATTCCTTCTGAATATTGTAGTCAG 2064 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | | ||| ||||| | || || ||||||||||| | ||| || || ||||| | Sbjct 2065 ACAAAGTACGACCATCTTCCAACTGCTTACCAGCAAAGATCAATCTCTGCTGGTCTGGGG 2124 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||||||||| ||||| ||||| ||||||||||| |||||| ||||||| Sbjct 2125 GGATACCTTCCTTATCTTGGATCTTGGCTTTGACATTTTCAATGGTATCAGATGGTTCTA 2184 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || ||||| || || | ||||| || || |||||||| Sbjct 2185 CTTCCAATGTGATGGTCTTTCCAGTAAGTGTCTTCACGAAGATCTGCAT 2233 Score = 179 bits (198), Expect = 7e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| || || || || || || || ||||||||||| || || ||||||| Sbjct 3145 TACCACCTCTCAATCGAAGCACCAAATGAAGTGTGGATTCTTTCTGGATGTTGTAATCAG 3204 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||| ||||| | || || |||||||| || | || ||||| ||||| | Sbjct 3205 ACAAGGTACGACCATCTTCCAACTGCTTGCCAGCAAAAATCAACCTCTGTTGGTCTGGTG 3264 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||||||||| ||||||||||| || ||||| ||||| |||||| |||||| | Sbjct 3265 GAATGCCTTCCTTATCCTGAATCTTTGCCTTCACATTCTCAATGGTATCAGAAGGTTCGA 3324 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || ||||| ||||| | || || ||||| || ||||| Sbjct 3325 CTTCCAATGTGATGGTCTTTCCTGTGAGGGTTTTGACAAAAATTTGCAT 3373 Score = 174 bits (192), Expect = 3e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| | | |||||||| || || |||||||| ||||| ||||| || |||| Sbjct 2233 TACCACCTCTAAGCCTAAGAACTAAATGGAGTGTAGATTCCTTCTGAATATTGTAGTCAG 2292 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | ||| ||||| || || || || |||||||| || || || || ||||||| Sbjct 2293 ACAGAGTGCGACCATCTTCAAGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGAG 2352 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| |||||||||||||| |||||||| ||||| || || ||| || | Sbjct 2353 GGATACCTTCCTTGTCTTGAATCTTTGCCTTTACATTCTCAATGGTGTCTGAAGGCTCCA 2412 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | || || || || ||||| | ||||| ||||| || ||||| Sbjct 2413 CTTCTAGGGTAATTGTTTTTCCTGTAAGGGTCTTCACAAAAATTTGCAT 2461 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| | || || || | ||| ||||||||||| ||||| || || || |||| Sbjct 2917 TACCACCTCTAAGTCGGAGTACAAGGTGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAG 2976 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | || ||||| |||||||| || |||||||| || ||||| || ||||| | Sbjct 2977 ACAATGTGCGGCCATCTTCCAGTTGTTTACCTGCAAAGATCAGCCTTTGCTGGTCTGGGG 3036 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||||||||| ||||| ||||| ||||||||||| ||||| ||||| | Sbjct 3037 GAATACCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCAATGGTATCTGATGGTTCAA 3096 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || ||||| ||||| | || || ||||| |||||||| Sbjct 3097 CCTCAAGTGTGATGGTCTTTCCTGTGAGGGTTTTCACAAAGATCTGCAT 3145 Score = 161 bits (178), Expect = 2e-34 Identities = 163/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || || || || |||||||| ||||| || || ||||| || | | | || ||| Sbjct 1794 AGGACCAAATGAAGGGTAGATTCCTTCTGAATGTTGTAATCTGACAATGTACGCCCATCT 1853 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || || || || || |||||||| ||||| || |||||||| || || || ||||| || Sbjct 1854 TCCAGCTGCTTGCCTGCAAAGATCAGTCTCTGCTGATCTGGTGGAATGCCCTCCTTGTCC 1913 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || ||||||||||||||||||||||| || ||| ||||| ||||||||||| || ||| Sbjct 1914 TGGATCTTTGCTTTTACATTTTCAATTGTGTCAGAGGGTTCAACTTCCAAAGTGATGGTC 1973 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || | ||||| || || |||||||| Sbjct 1974 TTTCCAGTGAGGGTCTTCACGAAGATCTGCAT 2005 Score = 156 bits (172), Expect = 8e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| | | || ||||| || || || || || ||||| ||||| ||||||| Sbjct 2461 TACCACCTCTGAGCCTGAGTACTAAATGGAGCGTGGACTCCTTCTGGATATTGTAATCAG 2520 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | ||| ||||| || || || |||||||| || | || |||||||| |||| Sbjct 2521 ACAATGTACGACCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGTTGATCAGGAG 2580 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||||||||| ||||| | ||| ||||||||||| |||||| || || | Sbjct 2581 GGATGCCTTCCTTATCTTGGATCTTAGTTTTAACATTTTCAATAGTATCAGATGGCTCAA 2640 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | ||||| || || ||||| | || || ||||| |||||||| Sbjct 2641 CCTCAAGTGTTATGGTTTTTCCTGTGAGGGTTTTCACAAAGATCTGCAT 2689 >seq2442759 Length=1285 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| || | || || || || || |||||||| ||||| || || ||||| | Sbjct 85 TACCACCTCTTAATCTAAGGACCAAATGAAGTGTAGATTCCTTCTGGATGTTGTAATCTG 144 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | || ||||| || || |||||||||||||| | || || || || || | Sbjct 145 ACAATGTGCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCGGGTG 204 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||||||||| |||||||| ||||||||||| || || || ||| |||| Sbjct 205 GAATGCCCTCCTTATCTTGGATCTTTGCCTTTACATTTTCGATGGTGTCTGAAGGCTCTA 264 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || ||||| || || | ||||| ||||| |||||||| Sbjct 265 CCTCAAGGGTAATGGTCTTCCCAGTGAGTGTCTTCACAAAGATCTGCAT 313 >seq2750648 Length=12224 Score = 134 bits (148), Expect = 3e-26 Identities = 169/232 (73%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || ||||| | | || ||| || || | ||||||||||| || || |||||||||| Sbjct 11049 CCCCCTCTAAGTCTCAAAACCAAATGAATTGTAGATTCTTTTTGAATGTTATAATCAGTA 10990 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || ||||||| |||||| || || || |||| || |||||||| ||||| Sbjct 10989 ATACATTTATTATCTTCTAATTGTTTACCGGCGAAAATTAATCGCTGTTGATCGGGAGGA 10930 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || ||||| || ||| ||| | ||||| || || || | ||||||| Sbjct 10929 ATACCTTCTTTGTCTTGTATTTTTTGTTTAAGTTTTTCTATTGTCTCTCCCGATTCTACT 10870 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTA 82815 || | ||| || ||||| || || | || ||||| ||||| |||||||||| Sbjct 10869 TCTATAGTAATTGTCTTACCAGTGAGTGTTTTTACGAATATTTGCATTATTA 10818 >seq642385 Length=370 Score = 125 bits (138), Expect = 1e-23 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| || | || || || || || |||||||| ||||| || || || || | Sbjct 38 TACCACCTCTTAATCTAAGGACCAAATGGAGTGTAGATTCCTTCTGGATGTTGTAGTCTG 97 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | || ||||| || || |||||||||||||| | || ||||| ||||| | Sbjct 98 ACAATGTGCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGTTGGTCTGGGG 157 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||||||||| ||||| || || ||| ||||||| | || || ||| Sbjct 158 GGATCCCTTCCTTATCTTGGATCTTGGCCTTCACAATTTCAATTGAGTCTGATGGATCTC 217 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | | | || | ||||| ||||| | ||||| || || |||||||| Sbjct 218 GTACAAGCGTAAGGGTCTTTCCTGTTAGTGTCTTGACGAAGATCTGCAT 266 >seq2408123 Length=1217 Score = 91.5 bits (100), Expect = 3e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 ||||| || || |||||||| || |||||||||||||| |||||| || || || || Sbjct 712 CCTTCTTTGTCCTGAATCTTAGCCTTTACATTTTCAATAGTATCAGATGGCTCGACCTCT 771 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | ||| || |||||||| || | ||| || ||||| ||||||||| Sbjct 772 AGAGTGATGGTCTTGCCAGTAAGCGTTTTCACAAAGATCTGCATT 816 >seq2713712 Length=2921 Score = 84.2 bits (92), Expect = 4e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 || || ||||||||||| || ||||||||||||||||| ||||| ||||| || || Sbjct 148 CCCTCTTTATCTTGAATTTTAGCTTTTACATTTTCAATAGTATCTGAGGGTTCAACCTCA 89 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || || |||||||| || | ||||| || || |||||||| Sbjct 88 AGGGTGATGGTCTTGCCCGTTAGGGTCTTCACGAAGATCTGCAT 45 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 948071241709440