Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2732657 118 1e-21 seq2442759 89.7 5e-13 >seq2732657 Length=3626 Score = 118 bits (130), Expect = 1e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || || || ||||| |||||||| || || ||| ||| | || || || Sbjct 2256 AAATGGAGTGTAGATTCCTTCTGAATATTGTAGTCAGACAGAGTGCGACCA-TCTTCAAG 2314 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || | || |||| ||||||||| |||||||| ||||||||||| || Sbjct 2315 CTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGAAT 2374 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||| ||| | | ||||| ||||| | |||||||| || | ||| | ||||| || Sbjct 2375 CTTTGCCTTTACATTCTCAATGGTGTCTGAAGGCTCCACTTCTAGGGTAATTGTTTTTCC 2434 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || ||||| ||||| Sbjct 2435 TGTAAGGGTCTTCACAAAAATTTGCAT 2461 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | |||||||| ||||| ||||||||||| || || ||| | || || || Sbjct 2484 AAATGGAGCGTGGACTCCTTCTGGATATTGTAATCAGACAATGTACGACCA-TCTTCCAG 2542 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || |||| | || ||| || || ||||||||||||||||| || ||| Sbjct 2543 CTGCTTACCAGCAAAAATCAACCTCTGTTGATCAGGAGGGATGCCTTCCTTATCTTGGAT 2602 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| || | | |||| || || | ||||| || || | || | |||||| || Sbjct 2603 CTTAGTTTTAACATTTTCAATAGTATCAGATGGCTCAACCTCAAGTGTTATGGTTTTTCC 2662 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| || || |||||||| Sbjct 2663 TGTGAGGGTTTTCACAAAGATCTGCAT 2689 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | ||||| |||||||| || |||||||| || || ||| | || || | Sbjct 3168 AAATGAAGTGTGGATTCTTTCTGGATGTTGTAATCAGACAAGGTACGACCA-TCTTCCAA 3226 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||||||| || |||| | || ||| ||||| || || ||||||||||| || || Sbjct 3227 CTGCTTGCCAGCAAAAATCAACCTCTGTTGGTCTGGTGGAATGCCTTCCTTATCCTGAAT 3286 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||| ||| | | ||||| || || | || || || || | |||| ||| || || Sbjct 3287 CTTTGCCTTCACATTCTCAATGGTATCAGAAGGTTCGACTTCCAATGTGATGGTCTTTCC 3346 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| || ||||| ||||| Sbjct 3347 TGTGAGGGTTTTGACAAAAATTTGCAT 3373 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGC 133514 ||||| | ||| || || ||||| || |||||||| || || | || || ||| Sbjct 1800 AAATGAAGGGTAGATTCCTTCTGAATGTTGTAATCTGACAATGTACGCCCATCTTCCAGC 1859 Query 133515 TGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATC 133574 |||||||| || | || || | |||||| || || || ||||| |||||||| |||| Sbjct 1860 TGCTTGCCTGCAAAGATCAGTCTCTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGGATC 1919 Query 133575 TTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCG 133634 ||| || | | |||| ||||| | ||| || || || | |||| ||| || || Sbjct 1920 TTTGCTTTTACATTTTCAATTGTGTCAGAGGGTTCAACTTCCAAAGTGATGGTCTTTCCA 1979 Query 133635 GTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || ||||| |||||||| Sbjct 1980 GTGAGGGTCTTCACGAAGATCTGCAT 2005 >seq2442759 Length=1285 Score = 89.7 bits (98), Expect = 5e-13 Identities = 146/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | || || || ||||| || |||||||| || ||| | | | || || || Sbjct 108 AAATGAAGTGTAGATTCCTTCTGGATGTTGTAATCTGACAATGTGCGGCCA-TCTTCCAG 166 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || || | || | || |||||||||||| || ||||| ||||| || ||| Sbjct 167 CTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCGGGTGGAATGCCCTCCTTATCTTGGAT 226 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||| ||| | | || | ||||| | ||||| || || | ||| | ||| || || Sbjct 227 CTTTGCCTTTACATTTTCGATGGTGTCTGAAGGCTCTACCTCAAGGGTAATGGTCTTCCC 286 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCATG 133661 || || || || || || ||||||||| Sbjct 287 AGTGAGTGTCTTCACAAAGATCTGCATG 314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 466798907554880