Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2732095 123 6e-23 >seq2732095 Length=3591 Score = 123 bits (136), Expect = 6e-23 Identities = 486/759 (64%), Gaps = 4/759 (1%) Strand=Plus/Plus Query 131522 GATATTGATGATTGGGAAAAA-TTAACCTTGAATGAAAAAGATTTTGTTTCCAAAGTTCT 131580 ||| | | ||| ||||| ||| |||| ||| || | | |||| ||||| | || || Sbjct 994 GATTTAGGTGACTGGGATAAACTTAAGGATGAG-GAGAGACATTTCATTTCCCATGTGCT 1052 Query 131581 TGCATTCTTCGCCGGAAGTGATGGCATTGTTATTGAAAATCTTGTTATTAATTTCATTCA 131640 ||||| ||||| | |||||| ||||||| |||||||||||| | ||| || Sbjct 1053 GGCATTTTTCGCTGCTTCTGATGGGATTGTTAATGAAAATCTTGTCGAGAGATTCTGCCA 1112 Query 131641 AGAAATTGATATTCCTGAAGTAACATCGTTCTACACATTTCAAGCCGCTGTTGAATCTAT 131700 |||| || | |||| |||| || || || || || ||| || | ||| ||| Sbjct 1113 AGAAGTTCAAGTTCCAGAAGCAAGATGCTTTTATGGTTTCCAAATTGCAATGGAAAATAT 1172 Query 131701 TCATAGCGAGATGTATTCATTATTGATTGAGAGTCTTGTTAAAAATGAAGATGATAAAAA 131760 || || || ||||| ||| | || | | | | | | || || |||| Sbjct 1173 CCACAGTGAAATGTACAGTTTACTCATCAACACCTACATCAGAGACTCTGAAGAACAAAA 1232 Query 131761 TAAATTATTTGATGCTGTAAATAAATTTCCTGCAATTAAAAAGAAAGCAGAATGGGCTAT 131820 || | | || |||| || | | || ||| | |||||||| || || |||||| | Sbjct 1233 TAGACTGTTCAATGCCGTTGAGACCTTGCCTTGTGTCAAAAAGAAGGCTGACTGGGCTCT 1292 Query 131821 TAAATGGATTCAAGATGATTCCGCTAATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGT 131880 | ||||||| |||| | |||| || | || | | | | || |||||| ||| Sbjct 1293 GAGATGGATTGCCCATGAAACTGCTAGTTATGCTGAACGTATCATTGCCTTTGCTGCTGT 1352 Query 131881 TGAAGGTATATTCTTTTCAGGTGCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATT 131940 |||||||| ||||| ||| | || ||| ||||||||||| ||||| ||||| | Sbjct 1353 GGAAGGTATTTTCTTCAGCGGTTCCTTTGCTGCGATCTTTTGGCTCAAGAAACGTGGCCT 1412 Query 131941 GATGCCTGGACTCTCATTGTCCAATCAATTCATCTCGAGAGATGAAGCATTGCATACTGA 132000 ||||||||| || | || |||| |||| ||||| || ||||||| | || ||||| Sbjct 1413 GATGCCTGGTCTTACCTTTAGCAATGAATTAATCTCCAGGGATGAAGGTCTTCACACTGA 1472 Query 132001 ATTTGCTATATTAATCTATAGAAAATTTGCT-GATAAACTTGATGAAAATAATATTAAAC 132059 ||||| | || | | | ||||| | | || | | | || | || || | Sbjct 1473 CTTTGCCTGTCTCATGT-TCAAGCATTTGGTAAACAAGCCTAGTCAACAGCATGTTCAGT 1531 Query 132060 AACTTATAAGCGAAGCAGTTGATATCGAGAAGGAGTTTATTACAGAAGCTTTGCCTTGCA 132119 | || || || || | || || | || || | || || ||| ||||| || Sbjct 1532 CTATCATTGATGATGCCGTCAAAATTGAACAAGAATTCTTAACTGATGCTCTGCCTGTCA 1591 Query 132120 ATTTGATTGGGATGAATGCTGACTCTATGAAGGAGTACATTGAATTCGTTGCTGATCGTT 132179 || | ||||| ||||| || ||||| | | ||||||||||| ||||| |||||| Sbjct 1592 ATCTCATTGGTATGAACTGTGTTCTTATGAGGCAATACATTGAATTTGTTGCAGATCGTC 1651 Query 132180 TAATTAACCAACTTGGATATTCCAAGATTTATAACACCCAAAACCCCTATACATGGATGG 132239 | || | || || | | ||| |||| || | | || || | | | |||| Sbjct 1652 TTCTTGTGGAGCTAGGCTGTGATAAGCTTTACAATGCAGAGAATCCATTTGACTTCATGG 1711 Query 132240 AGTCAATTTCGCTTGAAGGTAAAACGAACTTCTTCGAAA 132278 | || || ||||| |||||||| |||||||| |||| Sbjct 1712 AAAACATATCTCTTGAGGGTAAAACCAACTTCTTTGAAA 1750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1144985366050232