Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq2732657 105 4e-18 >seq2732657 Length=3626 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||||||| || | ||||||||| || ||| ||||| || ||||||||||| || Sbjct 3146 ACCACCTCTCAATCGAAGCACCAAATGAAGTGTGGATTCTTTCTGGATGTTGTAATCAGA 3205 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | || || | || ||||| || || || ||||||||||| | ||| || ||| | || Sbjct 3206 CAAGGTACGACCATCTTCCAACTGCTTGCCAGCAAAAATCAACCTCTGTTGGTCTGGTGG 3265 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || ||| || || | |||| || | ||| || | ||| | Sbjct 3266 AATGCCTTCCTTATCCTGAATCTT-TGCCTTCACATTCTCAATGGTATCAGAAGGTTCGA 3324 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || ||||| | ||||| ||||| || |||||| Sbjct 3325 CTTCCAATGTGATGGTCTTTCCTGTGAGGGTTTTGACAAAAATTTGCATA 3374 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||||||| | || ||||| || ||||| || || || || ||||| || || Sbjct 2690 ACCACCTCTCAATCTTAGTACCAAGTGAAGAGTAGATTCCTTCTGAATATTGTAGTCTGA 2749 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | |||||| | || |||| ||||| || ||||| |||| | |||||| ||| | || Sbjct 2750 CAATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGAGG 2809 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| || || || || | || |||| || | |||||| || ||| | Sbjct 2810 AATACCTTCCTTATCTTGGATCTT-AGCTTTGACATTTTCAATGGTGTCAGATGGTTCTA 2868 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | ||||| ||||| ||||||||| Sbjct 2869 CTTCCAAGGTGATGGTCTTTCCAGTGAGGGTTTTAACAAATATCTGCATA 2918 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | | | || ||||| || ||| ||| || || || |||||||| || Sbjct 2462 ACCACCTCTGAGCCTGAGTACTAAATGGAGCGTGGACTCCTTCTGGATATTGTAATCAGA 2521 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| || | || |||| || || || ||||||||||| | ||| ||||| | || Sbjct 2522 CAATGTACGACCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGTTGATCAGGAGG 2581 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || || || |||| ||||| || | || || || || | Sbjct 2582 GATGCCTTCCTTATCTTGGATCTT-AGTTTTAACATTTTCAATAGTATCAGATGGCTCAA 2640 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| || || ||||| ||||| | ||||| ||||||||||||||| Sbjct 2641 CCTCAAGTGTTATGGTTTTTCCTGTGAGGGTTTTCACAAAGATCTGCATA 2690 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||| | || | || | || ||||| || || || |||||||| || || Sbjct 2918 ACCACCTCTAAGTCGGAGTACAAGGTGAAGAGTAGATTCCTTCTGAATGTTGTAGTCAGA 2977 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | |||||| | || |||| |||||| || ||||| |||| | ||||| ||| | || Sbjct 2978 CAATGTGCGGCCATCTTCCAGTTGTTTACCTGCAAAGATCAGCCTTTGCTGGTCTGGGGG 3037 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | |||||| || || || || ||| | ||| ||| ||| || || ||| | Sbjct 3038 AATACCTTCCTTATCTTGGATCTTAGCTTTGA-CATTTTCAATGGTATCTGATGGTTCAA 3096 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || ||||| | ||||| ||||||||||||||| Sbjct 3097 CCTCAAGTGTGATGGTCTTTCCTGTGAGGGTTTTCACAAAGATCTGCATA 3146 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||||||| || | || | || ||||| || || || ||||||||||| || Sbjct 3374 ACCACCTCTCAATCGGAGTACAAGGTGAAGAGTAGATTCCTTCTGAATGTTGTAATCAGA 3433 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 | ||| || | || ||||| || ||||| ||||| ||||| | ||| || ||| | || Sbjct 3434 CAATGTACGACCATCTTCCAACTGCTTTCCAGCAAAGATCAACCTCTGTTGGTCTGGAGG 3493 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||| || || || || | || |||| || | ||| || || ||| | Sbjct 3494 AATACCTTCCTTATCTTGGATCTT-AGCTTTGACATTTTCAATGGTATCTGATGGTTCTA 3552 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| || || || || ||||| | || || || |||||||||||| Sbjct 3553 CCTCAAGGGTTATGGTCTTTCCTGTGAGTGTCTTGACGAAGATCTGCATA 3602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 317684427671040