Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2732657 132 1e-25 >seq2732657 Length=3626 Score = 132 bits (146), Expect = 1e-25 Identities = 147/195 (75%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 206179 TTTTG-CAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| |||||| ||||||||||| || ||||| |||||||| ||| |||||| || | Sbjct 3365 TTTTGTCAAAACCCTCACAGGAAAGACCATCACATTGGAAGTCGAACCTTCTGATACCAT 3306 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 || || ||| ||||||||| || || ||||| ||| || ||| || || | Sbjct 3305 TGAGAATGTGAAGGCAAAGATTCAGGATAAGGAAGGCATTCCACCAGACCAACAGAGGTT 3246 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 || || || || ||||||||||||||||| | || ||| | ||||||||| ||||||| Sbjct 3245 GATTTTTGCTGGCAAGCAGTTGGAAGATGGTCGTACCTTGTCTGATTACAACATCCAGAA 3186 Query 206358 AGAGTCTACTCTTCA 206372 ||| || || ||||| Sbjct 3185 AGAATCCACACTTCA 3171 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| ||||| || |||||||||||||| ||| ||||||||| | ||| Sbjct 1990 AAGACCCTCACTGGAAAGACCATCACTTTGGAAGTTGAACCCTCTGACACAATTGAAAAT 1931 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 ||||| |||||| || || || || || ||| || || || ||||| ||||| Sbjct 1930 GTAAAAGCAAAGATCCAGGACAAGGAGGGCATTCCACCAGATCAGCAGAGACTGATCTTT 1871 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | || ||| | ||||||||| | ||||| || ||| Sbjct 1870 GCAGGCAAGCAGCTGGAAGATGGGCGTACATTGTCAGATTACAACATTCAGAAGGAATCT 1811 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| | || | |||||||| Sbjct 1810 ACCCTTCATTTGGTCCTTAGACTTCG 1785 Score = 123 bits (136), Expect = 6e-23 Identities = 150/202 (74%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||||||| ||||| ||||| ||||| || ||||| |||||||| ||| |||||| Sbjct 2914 CAGATATTTGTTAAAACCCTCACTGGAAAGACCATCACCTTGGAAGTAGAACCATCTGAC 2855 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| || ||||| || ||| ||||| || ||||| ||| || ||| || Sbjct 2854 ACCATTGAAAATGTCAAAGCTAA-GATCCAAGATAAGGAAGGTATTCCTCCAGACCAGCA 2796 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || || ||||| || || || ||| |||||||||| | || ||| | || ||||| | Sbjct 2795 GAGGCTGATCTTTGCTGGTAAACAGCTGGAAGATGGCCGCACATTGTCAGACTACAATAT 2736 Query 206352 CCAGAAAGAGTCTACTCTTCAC 206373 ||||| || |||||||||||| Sbjct 2735 TCAGAAGGAATCTACTCTTCAC 2714 Score = 118 bits (130), Expect = 2e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||||||||| || || || | || || ||| || || Sbjct 3598 CAGATCTTCGTCAAGACACTCACAGGAAAGACCATAACCCTTGAGGTAGAACCATCAGAT 3539 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| || ||||| || ||| ||||| || ||||| ||| || ||| || Sbjct 3538 ACCATTGAAAATGTCAAAGCTAA-GATCCAAGATAAGGAAGGTATTCCTCCAGACCAACA 3480 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || | ||||| || |||||||||||||||||||| | || ||| | ||||||||| | Sbjct 3479 GAGGTTGATCTTTGCTGGAAAGCAGTTGGAAGATGGTCGTACATTGTCTGATTACAACAT 3420 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| || ||||||||||||||||| Sbjct 3419 TCAGAAGGAATCTACTCTTCACCTTGT 3393 Score = 114 bits (126), Expect = 3e-20 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| ||||||||||| || ||||| | || || ||| || || Sbjct 3142 CAGATCTTTGTGAAAACCCTCACAGGAAAGACCATCACACTTGAGGTTGAACCATCAGAT 3083 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || | ||| || ||||| || ||| ||||| || ||||| ||| || ||| || Sbjct 3082 ACCATTGAAAATGTCAAAGCTAA-GATCCAAGATAAGGAAGGTATTCCCCCAGACCAGCA 3024 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 ||| || ||||| || || || || |||||||||| | || ||| | || |||||| | Sbjct 3023 AAGGCTGATCTTTGCAGGTAAACAACTGGAAGATGGCCGCACATTGTCTGACTACAACAT 2964 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||||| || ||||||||||||||||| | ||||| || Sbjct 2963 TCAGAAGGAATCTACTCTTCACCTTGTACTCCGACTTAGA 2924 Score = 102 bits (112), Expect = 2e-16 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || ||||| || ||||| |||||||| ||| ||||| || | ||| Sbjct 2218 AAGACACTTACTGGAAAGACCATCACATTGGAAGTAGAACCATCTGATACCATTGAAAAT 2159 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || ||| ||||| || ||||| || || ||| || ||| | ||||| Sbjct 2158 GTCAAAGCCAA-GATCCAAGATAAGGAAGGTATCCCCCCAGACCAGCAGAGATTGATCTT 2100 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 || || ||||||||||||||||| | |||||| | || ||||| | ||||| || || Sbjct 2099 TGCTGGTAAGCAGTTGGAAGATGGTCGTACTTTGTCTGACTACAATATTCAGAAGGAATC 2040 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391 ||| || || | ||| | || ||| || Sbjct 2039 TACACTCCATTTGGTTCTCAGGCTTAGA 2012 Score = 98.7 bits (108), Expect = 2e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || ||||||||||| || || | |||||||| ||| ||||| | || Sbjct 2446 AAGACCCTTACAGGAAAAACAATTACCCTAGAAGTGGAGCCTTCAGACACCATTGAGAAT 2387 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| |||||||||||| || ||||| || || ||| || || || ||||| Sbjct 2386 GTAAAGGCAAAGATTCAAGACAAGGAAGGTATCCCTCCAGACCAGCAGAGGCTGATCTTT 2327 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| | |||||||| | ||| || | || ||||| | ||||| || ||| Sbjct 2326 GCAGGCAAGCAGCTTGAAGATGGTCGCACTCTGTCTGACTACAATATTCAGAAGGAATCT 2267 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 || || || | ||| | || ||| || Sbjct 2266 ACACTCCATTTAGTTCTTAGGCTTAGA 2240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1140169301589752