Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq2750648 127 2e-24 seq2732657 98.7 8e-16 >seq2750648 Length=12224 Score = 127 bits (140), Expect = 2e-24 Identities = 160/220 (73%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 106255 TAAAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAAC 106314 ||| ||||||||| || || |||||| | ||||| ||||| ||||| | ||| |||| Sbjct 10818 TAATAATGCAAATATTCGTAAAAACACTCACTGGTAAGACAATTACTATAGAAGTAGAAT 10877 Query 106315 CCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTG 106374 | || || | | | || | ||||||||||| ||||||||||| | || | Sbjct 10878 CGGGAGAGACAATAGAAAAACTTAAACAAAAAATACAAGACAAAGAAGGTATTCCTCCCG 10937 Query 106375 ATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATT 106434 ||||||| | | |||| || || ||||||||||||||| |||| ||| |||| Sbjct 10938 ATCAACAGCGATTAATTTTCGCCGGTAAACAATTAGAAGATAATAAATGTATTACTGATT 10997 Query 106435 ACAACATACAAAAAGAATCTACACTACATTTAGTATTGAG 106474 | ||||| ||||||||||||||| | ||||| || ||||| Sbjct 10998 ATAACATTCAAAAAGAATCTACAATTCATTTGGTTTTGAG 11037 >seq2732657 Length=3626 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||||||||| ||||| | || || |||||||| || ||||| ||||| Sbjct 3373 ATGCAAATTTTTGTCAAAACCCTCACAGGAAAGACCATCACATTGGAAGTCGAACCTTCT 3314 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | ||||| ||| ||| || || |||||| | || || ||| Sbjct 3313 GATACCATTGAGAATGTGAAGGCAAAGATTCAGGATAAGGAAGGCATTCCACCAGACCAA 3254 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || ||| | |||| ||| ||||| || || |||||| | || || ||||||||| Sbjct 3253 CAGAGGTTGATTTTTGCTGGCAAGCAGTTGGAAGATGGTCGTACCTTGTCTGATTACAAC 3194 Query 106440 ATACAAAAAGAATCTACACTACATTTAGT 106468 || || |||||||| ||||| ||||| || Sbjct 3193 ATCCAGAAAGAATCCACACTTCATTTGGT 3165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 388841780784896