Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2595133 127 3e-23 seq2605278 118 1e-20 seq498297 118 1e-20 seq976528 100 4e-15 seq1603026 98.7 1e-14 seq771872 91.5 2e-12 seq2400810 89.7 7e-12 seq1387796 89.7 7e-12 >seq2595133 Length=1749 Score = 127 bits (140), Expect = 3e-23 Identities = 168/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | ||||| || || ||| |||| | ||| ||| |||| || Sbjct 310 ATCTACAAGGTGTTGAAGCAAGTTCATCCCGATACCGGT-----ATC-TCCTCCAAGGCC 363 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||||| || || || ||||| | || ||||||| | |||||| | Sbjct 364 ATGTCTATCATGAACTCTTTCGTGAATGACATCTTTGAGCGCATCGCTGCTGAGGCCTCT 423 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||| | || |||||||||| || ||| | || || |||||||| || || Sbjct 424 CGTCTGGCTCACTACAACAAGCGCTCAACCATCACTTCTCGGGAAATCCAGACAGCAGTT 483 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || | ||| || ||||| |||| ||| ||||| || |||||||||| Sbjct 484 CGTCTTCTGTTGCCTGGTGAACTCGCCAAGCATGCCGTGTCTGAGGGCACCA 535 >seq2605278 Length=1798 Score = 118 bits (130), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | ||||| || || ||| |||| | ||| ||| |||| || Sbjct 1593 ATCTACAAGGTGTTGAAGCAAGTTCATCCCGATACCGGT-----ATC-TCCTCCAAGGCC 1540 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||||| || || || ||||| | || ||||||| | |||||| | Sbjct 1539 ATGTCTATCATGAACTCTTTCGTGAATGACATCTTTGAGCGCATCGCTGCTGAGGCCTCT 1480 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || |||| | || |||||||||| || ||| | || || |||||||| || || Sbjct 1479 CGTTTGGCTCACTACAACAAGCGCTCAACCATCACTTCTCGGGAAATCCAGACAGCAGTT 1420 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || | ||| || ||||| |||| ||| ||||| || || ||||||| Sbjct 1419 CGTCTTCTGTTGCCTGGTGAACTCGCCAAGCATGCCGTGTCTGAAGGCACCA 1368 >seq498297 Length=353 Score = 118 bits (130), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | ||||| || || ||| |||| | |||||||| | || Sbjct 23 ATCTACAAGGTGTTGAAGCAAGTTCATCCCGATACCGGTAAC---TCCTCCAA---GGCC 76 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||||| || || || ||||| | || ||||||| | |||||| | Sbjct 77 ATGTCTATCATGAACTCTTTCGTGAATGACATCTTTGAGCGCATCGCTGCTGAGGCCTCT 136 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||| | || |||||||||| || ||| | || || |||||||| || || Sbjct 137 CGTCTGGCCCACTACAACAAGCGCTCAACCATCACTTCTCGGGAAATCCAGACAGCAGTT 196 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || || | ||| | ||||| |||| ||| ||||| || |||||||||| Sbjct 197 CGTCTTCTGTTGCCTTGTGAACTCGCCAAGCATGCCGTGTCTGAGGGCACCA 248 >seq976528 Length=414 Score = 100 bits (110), Expect = 4e-15 Identities = 133/185 (72%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 724958 CTCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGG 725017 |||| |||| ||| | | ||||||||||| || || || | ||| | || ||||||| Sbjct 270 CTCCTCCAAGGCCAGGGCTATCATGAACTCTTTCGTGAATGCCATCTTTGAGCGCATCGC 211 Query 725018 CACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGAT 725077 | |||||| ||| ||||| | || |||||||||| || ||| | || || || Sbjct 210 TGCTGAGGCCTCTCGTCTGGCTCACTACAACAAGCGCTCAACCATCACTTCTCGGGAAAT 151 Query 725078 CCAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGG 725137 |||||| || || || || | ||| || ||||| |||| ||| ||||| || ||||| Sbjct 150 CCAGACAGCAGTTCGTCTTCTGTTGCCTGGTGAACTCGCCAAGCATGCCGTGTCTGAGGG 91 Query 725138 CACCA 725142 ||||| Sbjct 90 CACCA 86 >seq1603026 Length=547 Score = 98.7 bits (108), Expect = 1e-14 Identities = 155/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | ||||| || | ||| |||| | ||| ||| ||||| || Sbjct 332 ATCTACAAGGTGTTGAAGCAAGTTTATCCCGATACCGGT-----ATC-TCCTACAAGGCC 385 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||| | ||||||||||| | || || ||||| | || ||||||| | || ||| | Sbjct 386 ATGACTATCATGAACTCTCTCGTGAATGACATCTTTGAGCGCATCGCTGCTGACGCCTCT 445 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||| | || |||||||||| || ||| | || || |||||||| || || Sbjct 446 CGTCTGGCTCACTACAACAAGCGCTCAACCATCACTTCTCGGGAAATCCAGACAGCAGTT 505 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTC 725131 || || | ||| || ||||| |||| ||| ||||| || Sbjct 506 CGTCTTCTGTTGCCTGGTGAACTCGCCAAGCATGCCGTGTC 546 >seq771872 Length=386 Score = 91.5 bits (100), Expect = 2e-12 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 724964 CAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGA 725023 |||| ||||||| ||||||||||| || || || ||||| | || ||||||| | || Sbjct 382 CAAGGCCATGTCTATCATGAACTCTTTCGTGAATGACATCTTTGAGCGCATCGCTGCTGA 323 Query 725024 GGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGAC 725083 |||| ||| ||||| | || |||||||||| || ||| | || || |||||||| Sbjct 322 GGCCTCTCGTCTGGCTCACTACAACAAGCGCTCAACCATCACTTCTCGGGAAATCCAGAC 263 Query 725084 CGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCC 725126 || || || || | ||| || ||||| |||| ||| ||| Sbjct 262 AGCAGTTCGTCTTCTGTTGCCTGGTGAACTCGCCAAGCATGCC 220 >seq2400810 Length=1203 Score = 89.7 bits (98), Expect = 7e-12 Identities = 107/144 (74%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | ||||| || || ||| |||| | ||| ||| |||| || Sbjct 1040 ATCTACAAGGTGTTGAAGCAAGTTCATCCCGATACCGGT-----ATC-TCCTCCAAGGCC 1093 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||||| || || || ||||| | || ||||||| | |||||| | Sbjct 1094 ATGTCTATCATGAACTCTTTCGTGAATGACATCTTTGAGCGCATCGCTGCTGAGGCCTCT 1153 Query 725031 CGCCTGGCGCGCTCCAACAAGCGC 725054 || ||||| | || |||||||||| Sbjct 1154 CGTCTGGCTCACTACAACAAGCGC 1177 >seq1387796 Length=489 Score = 89.7 bits (98), Expect = 7e-12 Identities = 107/144 (74%), Gaps = 6/144 (4%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||||||||||| | ||||| || || ||| |||| | ||| ||| |||| || Sbjct 20 ATCTACAAGGTGTTGAAGCAAGTTCATCCCGATACCGGT-----ATC-TCCTCCAAGGCC 73 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||||| || || || ||||| | || ||||||| | |||||| | Sbjct 74 ATGTCTATCATGAACTCTTTCGTGAATGACATCTTTGAGCGCATCGCTGCTGAGGCCTCT 133 Query 725031 CGCCTGGCGCGCTCCAACAAGCGC 725054 || ||||| | || |||||||||| Sbjct 134 CGTCTGGCTCACTACAACAAGCGC 157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6912499971791344