Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq2732657 125 6e-24 seq2442759 122 8e-23 >seq2732657 Length=3626 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | || | |||||||| | ||| ||||| |||||||||||||| | | Sbjct 1779 CCACCACGAAGTCTAAGGACCAAATGAAGGGTAGATTCCTTCTGAATGTTGTAATCTGAC 1838 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || ||| | || ||||||||||| || ||||| |||| | |||||| || | ||| Sbjct 1839 AATGTACGCCCATCTTCCAGCTGCTTGCCTGCAAAGATCAGTCTCTGCTGATCTGGTGGA 1898 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||||||| ||||||| || | | || | | ||||| | ||| || Sbjct 1899 ATGCCCTCCTTGTCCTGGATCTTTGCTTTTACATTTTCAATTGTGTCAGAGGGTTCAACT 1958 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || || | || ||||| || |||||||| Sbjct 1959 TCCAAAGTGATGGTCTTTCCAGTGAGGGTCTTCACGAAGATCTGCAT 2005 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | || || | ||||| || | ||| ||||| ||||| ||||| || | | Sbjct 2691 CCACCTCTCAATCTTAGTACCAAGTGAAGAGTAGATTCCTTCTGAATATTGTAGTCTGAC 2750 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || |||||||| ||||| ||||| |||| || ||||||||| | |||| Sbjct 2751 AATGTGCGGCCATCTTCCAGCTGTTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGA 2810 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| || |||||| || | | || | | ||||| | ||| || Sbjct 2811 ATACCTTCCTTATCTTGGATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGTTCTACT 2870 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| ||||| || || || || | ||||| |||||||||||||| Sbjct 2871 TCCAAGGTGATGGTCTTTCCAGTGAGGGTTTTAACAAATATCTGCAT 2917 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 35527 CACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTC 35586 ||||||||| | || || || || ||||||||||| | |||||| || | || || Sbjct 3164 CACCAAATGAAGTGTGGATTCTTTCTGGATGTTGTAATCAGACAAGGTACGACCATCTTC 3223 Query 35587 CAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCAT 35646 || |||||| || ||||| ||||||| ||| ||||| | |||| || ||||| ||| Sbjct 3224 CAACTGCTTGCCAGCAAAAATCAACCTCTGTTGGTCTGGTGGAATGCCTTCCTTATCCTG 3283 Query 35647 GATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 |||||| ||||| | | | | || || | ||| || |||| ||||| || || Sbjct 3284 AATCTTTGCCTTCACATTCTCAATGGTATCAGAAGGTTCGACTTCCAATGTGATGGTCTT 3343 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || | ||||| ||||| || ||||| Sbjct 3344 TCCTGTGAGGGTTTTGACAAAAATTTGCAT 3373 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | | ||| | || ||||| | ||| |||||| || || |||||||| | | Sbjct 2463 CCACCTCTGAGCCTGAGTACTAAATGGAGCGTGGACTCCTTCTGGATATTGTAATCAGAC 2522 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || |||||||||||||| ||||| ||||||| ||| || || | ||| Sbjct 2523 AATGTACGACCATCTTCCAGCTGCTTACCAGCAAAAATCAACCTCTGTTGATCAGGAGGG 2582 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || ||||| || |||||| || | | || | | || || | || ||| Sbjct 2583 ATGCCTTCCTTATCTTGGATCTTAGTTTTAACATTTTCAATAGTATCAGATGGCTCAACC 2642 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | || || ||||| || || | ||||||||||| |||||||| Sbjct 2643 TCAAGTGTTATGGTTTTTCCTGTGAGGGTTTTCACAAAGATCTGCAT 2689 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| ||||||||||| || | ||| || || | || ||||| || ||||| ||||| Sbjct 2955 TCCTTCTGAATGTTGTAGTCAGACAATGTGCGGCCATCTTCCAGTTGTTTACCTGCAAAG 3014 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| || |||||||| | |||| | ||||| || |||||| || | | || Sbjct 3015 ATCAGCCTTTGCTGGTCTGGGGGAATACCTTCCTTATCTTGGATCTTAGCTTTGACATTT 3074 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || || | ||| ||||| | ||||| || || || || | ||||||||| Sbjct 3075 TCAATGGTATCTGATGGTTCAACCTCAAGTGTGATGGTCTTTCCTGTGAGGGTTTTCACA 3134 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 3135 AAGATCTGCAT 3145 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| |||||||||||||| | ||| || || | || |||| |||||| || ||||| Sbjct 3411 TCCTTCTGAATGTTGTAATCAGACAATGTACGACCATCTTCCAACTGCTTTCCAGCAAAG 3470 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| ||| ||||| | ||||| | ||||| || |||||| || | | || Sbjct 3471 ATCAACCTCTGTTGGTCTGGAGGAATACCTTCCTTATCTTGGATCTTAGCTTTGACATTT 3530 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || || | ||| ||||| | || || || || || || | || || || Sbjct 3531 TCAATGGTATCTGATGGTTCTACCTCAAGGGTTATGGTCTTTCCTGTGAGTGTCTTGACG 3590 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 3591 AAGATCTGCAT 3601 >seq2442759 Length=1285 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| | ||| || | |||||||| | ||| ||||| || ||||||||||| | | Sbjct 87 CCACCTCTTAATCTAAGGACCAAATGAAGTGTAGATTCCTTCTGGATGTTGTAATCTGAC 146 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||||||||| || ||||| ||||||| ||||||||| | ||| Sbjct 147 AATGTGCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCGGGTGGA 206 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | || |||||| || ||||||| ||| | | || | | ||||| | || ||| Sbjct 207 ATGCCCTCCTTATCTTGGATCTTTGCCTTTACATTTTCGATGGTGTCTGAAGGCTCTACC 266 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | || || || || || || | || |||||||| |||||||| Sbjct 267 TCAAGGGTAATGGTCTTCCCAGTGAGTGTCTTCACAAAGATCTGCAT 313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 435293557936960