Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2732095 304 2e-77 seq2601243 95.1 2e-14 seq2191123 86.0 8e-12 >seq2732095 Length=3591 Score = 304 bits (336), Expect = 2e-77 Identities = 540/787 (69%), Gaps = 3/787 (0%) Strand=Plus/Minus Query 39310 TGACATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCC 39369 |||||||||||| ||||||||| || || || | || || || || || ||||| || Sbjct 1788 TGACATAACTCCACATTTTTGGTACTCGCCTACTCTCTTTTCAAAGAAGTTGGTTTTACC 1729 Query 39370 TTCCAATGATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAA 39429 || | ||||| ||||||||||| ||||| ||||| |||||| || || | | | Sbjct 1728 CTCAAGAGATATGTTTTCCATGAAGTCAAATGGATTCTCTGCATTGTAAAGCTTATCACA 1669 Query 39430 TCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACA 39489 |||| || || | | ||||||||||||||| |||||| |||| | |||| Sbjct 1668 GCCTAGCTCCACAAGAAGACGATCTGCAACAAATTCAATGTATTGCCTCATAAGAACACA 1609 Query 39490 ATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTAC 39549 ||||| || ||||| || || || ||||| || |||| || |||| ||| || | || Sbjct 1608 GTTCATACCAATGAGATTGACAGGCAGAGCATCAGTTAAGAATTCTTGTTCAATTTTGAC 1549 Query 39550 GGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAA 39609 ||| || || || || || || | ||| || | | ||||| || || Sbjct 1548 GGCATCATCAATGATAGACTGAACATGCTGTTGACTAGGCTTGTTTACCAAATGCTTGAA 1489 Query 39610 CATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAA 39669 ||| | ||||| |||||| || || || ||||| || |||||||| || ||| Sbjct 1488 CATGAGACAGGCAAAGTCAGTGTGAAGACCTTCATCCCTGGAGATTAATTCATTGCTAAA 1429 Query 39670 TGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGA 39729 || || |||||||| || ||||| || ||||||||||| || |||||||| || || Sbjct 1428 GGTAAGACCAGGCATCAGGCCACGTTTCTTGAGCCAAAAGATCGCAGCAAAGGAACCGCT 1369 Query 39730 AAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT 39789 ||||| || ||||| || || ||||| |||| | | || | ||||| | | | Sbjct 1368 GAAGAAAATACCTTCCACAGCAGCAAAGGCAATGATACGTTCAGCATAACTAGCAGTTTC 1309 Query 39790 ATGT---ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTAT 39846 ||| ||||| || | ||||| ||||| ||||| || |||||||||| || || | Sbjct 1308 ATGGGCAATCCATCTCAGAGCCCAGTCAGCCTTCTTTTTGACACAAGGCAAGGTCTCAAC 1249 Query 39847 AGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACT 39906 ||||| || || || || ||| ||| ||| | | || || | || | | ||| Sbjct 1248 GGCATTGAACAGTCTATTTTGTTCTTCAGAGTCTCTGATGTAGGTGTTGATGAGTAAACT 1189 Query 39907 ATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTC 39966 |||||||| ||||| ||||| || || || || || || ||||| ||||||||||| Sbjct 1188 GTACATTTCACTGTGGATATTTTCCATTGCAATTTGGAAACCATAAAAGCATCTTGCTTC 1129 Query 39967 AGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACT 40026 | || ||| || ||| || ||||| || | | ||||||||| || || |||||| Sbjct 1128 TGGAACTTGAACTTCTTGGCAGAATCTCTCGACAAGATTTTCATTAACAATCCCATCAGA 1069 Query 40027 AGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATT 40086 ||| || |||||||||| ||||| ||| |||| | | || || | | ||||| Sbjct 1068 AGCAGCGAAAAATGCCAGCACATGGGAAATGAAATGTCTCTCCTCATCCTTAAGTTTATC 1009 Query 40087 CCAGTCA 40093 ||||||| Sbjct 1008 CCAGTCA 1002 >seq2601243 Length=1778 Score = 95.1 bits (104), Expect = 2e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 69775 GTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAA 69834 ||||| ||||| || || ||||| || | || |||||||| | ||||| ||||| | | Sbjct 437 GTGTTGTTATAAACCCTAAGCATAGGCACAAGGCCATTAGAAGTTCCATTCGTTCCTGCA 378 Query 69835 ATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTA 69894 ||||||||||| | | |||||| | | || || || || || || ||| Sbjct 377 ATATAACTTCCCATAGATCGAATACAGTGCACATTCAGTCCAATGCCACCAGCAGACTTA 318 Query 69895 GAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATG 69954 || || |||||||| | || | |||||||| || || || ||||| ||||| ||||| Sbjct 317 GAAATGAGAGCACACTGCTTGAGGGTGTCATAAATGCCTTCAATGCTGTCATCCTTCATG 258 Query 69955 TTAAGAAGAAAACAGCT 69971 |||| | |||||||| Sbjct 257 GTAAGCAAGAAACAGCT 241 >seq2191123 Length=901 Score = 86.0 bits (94), Expect = 8e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 69775 GTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAA 69834 ||||| ||||| || || ||||| || | || |||||||| | ||||| ||||| | | Sbjct 522 GTGTTGTTATAAACCCTAAGCATAGGCACAAGGCCATTAGAAGTTCCATTCGTTCCTGCA 581 Query 69835 ATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTA 69894 ||||||||||| | | |||||| | | || || || || || || ||| Sbjct 582 ATATAACTTCCCATGGATCGAATACAGTGCACATTCAGTCCAATGCCACCAGCAGACTTA 641 Query 69895 GAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATG 69954 || || ||||| || | || | |||||||| || || || ||||| ||||| ||||| Sbjct 642 GAAATGAGAGCGCACTGCTTGAGGGTGTCATAAATGCCTTCAATGCTGTCATCCTTCATG 701 Query 69955 TTAAGAAGAAAACAGCT 69971 | || | |||||||| Sbjct 702 GTTAGCAAGAAACAGCT 718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 663290196511680