Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2732095 235 4e-57 seq2738736 113 3e-20 >seq2732095 Length=3591 Score = 235 bits (260), Expect = 4e-57 Identities = 498/729 (68%), Gaps = 22/729 (3%) Strand=Plus/Plus Query 43854 TGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTT-TGCG 43912 |||| ||||| ||||| || ||||| || ||||||||| | || | || ||| Sbjct 1052 TGGCATTTTTCGCTGCTTCTGATGGGATTGTTAATGAAAATCTTGTCGAGAGATTCTGC- 1110 Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 |||||||||||| | ||||||||| |||| |||||||| || |||||||| || |||||| Sbjct 1111 CAAGAAGTTCAAGTTCCAGAAGCAAGATGCTTTTATGGTTTCCAAATTGCAATGGAAAAT 1170 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAG 44032 || || |||||||||||| | || || | || ||||||| ||| | || | Sbjct 1171 ATCCACAGTGAAATGTACAGTTTACTCATCAACACCTACATCAGAGACTCTGAAGAACAA 1230 Query 44033 CATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCC 44092 || || |||| ||||| | || || | ||| | ||| | || || |||||||| Sbjct 1231 AATAGACTGTTCAATGCCGTTGAGACCTTGCCTTGTGTCAAAAAGAAGGCTGACTGGGCT 1290 Query 44093 CTTAAATGGAT---AAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTT 44149 || | |||||| || || || | || || ||||| | | || ||||| | | Sbjct 1291 CTGAGATGGATTGCCCATGAAACTGCTAGTTATGCTGAACGTATCATTGCCTTTGCTGCT 1350 Query 44150 GTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGT 44209 |||||||| |||||||| || || ||||| || || |||||| | |||||||| || Sbjct 1351 GTGGAAGGTATTTTCTTCAGCGGTTCCTTTGCTGCGATCTTTTGGCTCAAGAAACGTGGC 1410 Query 44210 TTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGG-CTT-ACATT 44267 |||||||||| | || ||| ||||| ||||| | |||||||| ||| ||| | Sbjct 1411 CTGATGCCTGGTCTTACCTTTAGCAATGAATTAATCTCCAGGGATGAAGGTCTTCACACT 1470 Query 44268 GCGATTTTGCTTG---CTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGA 44324 || ||||| || | |||| | | || | || | | |||||| | || | Sbjct 1471 --GACTTTGCCTGTCTCATGTT-CAAGCAT---TTGGTAA--ACAAGCCT--AGTCAACA 1520 Query 44325 -CAATTACAG-ATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGC 44382 || | ||| ||| ||| || || || || || ||||||||||| | || || Sbjct 1521 GCATGTTCAGTCTATCATTGATGATGCCGTCAAAATTGAACAAGAATTCTTAACTGATGC 1580 Query 44383 ATTACCTGTAAATTTAATAGGAATGAATGAACTTTTGATGAACCAATATATTGAATACAT 44442 | ||||| ||| | || || ||||| || | |||| ||||| ||||||| | Sbjct 1581 TCTGCCTGTCAATCTCATTGGTATGAACTGTGTTCTTATGAGGCAATACATTGAATTTGT 1640 Query 44443 TGCAGATCGTTTACTTTTGGAACTGGGTTGCGATAAACACTATATTGTACAAAACCCGTT 44502 |||||||||| | ||| |||| || || || ||||| | || | || | | || || || Sbjct 1641 TGCAGATCGTCTTCTTGTGGAGCTAGGCTGTGATAAGCTTTACAATGCAGAGAATCCATT 1700 Query 44503 TGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGG 44562 ||| || |||||||| || || | || || ||||| ||||| |||||||| | || || Sbjct 1701 TGACTTCATGGAAAACATATCTCTTGAGGGTAAAACCAACTTCTTTGAAAAGAGAGTAGG 1760 Query 44563 AGAATATCA 44571 || || || Sbjct 1761 CGAGTACCA 1769 >seq2738736 Length=4073 Score = 113 bits (124), Expect = 3e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 41004 CGACGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTTGATGGCATTGCCACCT 41063 ||||| ||||| |||| || ||||| || || || | | ||||| ||||| || Sbjct 1823 CGACGCATAATCATGTGTGCTTGGAATCCGGTTGATGTTCTTAAAATGGCCTTGCCTCCA 1882 Query 41064 TGTCATTTGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAA 41123 || || | | ||||||||||| || ||||| ||||| || || || | || ||| Sbjct 1883 TGCCACTGTCTGTGTCAGTTTTATGTGGCTAATGGAGAACTCTCTTGCCAGCTATACCAA 1942 Query 41124 AGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACG 41183 ||||||| || ||||| || || || || || ||||| || ||||||||||| ||||| Sbjct 1943 AGATCAGCAGATATGGGTCTTGGAGTTCCTTTCAACATTGCTAGTTATGCTCTTCTCACC 2002 Query 41184 TATATGATTGCACACGTTAC 41203 || |||||||| || || || Sbjct 2003 TACATGATTGCCCATGTAAC 2022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384131564825560