Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caridina_20multidentata_20[genbank_20GCA_5F002091895.1_202017-04-03] 2,750,712 sequences; 1,948,953,281 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq2732657 105 5e-18 seq2750648 100 2e-16 >seq2732657 Length=3626 Score = 105 bits (116), Expect = 5e-18 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||| ||||| | ||| || || || || |||||||| || || | || | ||||| Sbjct 2480 TACTAAATGGAGCGTGGACTCCTTCTGGATATTGTAATCAGACAATGTACGACCATCTTC 2539 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 ||||| ||||| || |||| | | ||||||||| || || | || || ||||| Sbjct 2540 CAGCTGCTTACCAGCAAAAATCAACCTCTGTTGATCAGGAGGGATGCCTTCCTTATCTTG 2599 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAACTTCTAGAGTTATAGATT 27216 |||||| |||| | |||| | ||| || | ||||| |||| || || ||||| | || Sbjct 2600 GATCTTAGTTTTAACATTTTCAATAGTATCAGATGGCT-CAACCTCAAGTGTTATGGTTT 2658 Query 27217 TGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 | || || || |||||||||||||| |||||| Sbjct 2659 TTCCTGTGAGGGTTTTCACAAAGATCTGCATA 2690 Score = 93.3 bits (102), Expect = 3e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 |||||| || | ||||| || || |||||||||||||| || |||| | ||||| Sbjct 2708 TACCAAGTGAAGAGTAGATTCCTTCTGAATATTGTAGTCTGACAATGTGCGGCCATCTTC 2767 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 ||||||||||| || | || || | ||| || || || || | ||| || ||||| Sbjct 2768 CAGCTGTTTACCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGAATACCTTCCTTATCTTG 2827 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 |||||| ||| | |||| | ||||| | | ||| ||||| | || || | || Sbjct 2828 GATCTTAGCTTTGACATTTTCAATGGTGTCAGATGGTTCTACTTCCAAGGTGATGGTCTT 2887 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || ||||| ||||| || |||||| Sbjct 2888 TCCAGTGAGGGTTTTAACAAATATCTGCATA 2918 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || ||||| |||||||| || |||| | ||||| || |||||||| Sbjct 2949 GTAGATTCCTTCTGAATGTTGTAGTCAGACAATGTGCGGCCATCTTCCAGTTGTTTACCT 3008 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | || || | || || || || || | ||| || ||||| |||||| ||| Sbjct 3009 GCAAAGATCAGCCTTTGCTGGTCTGGGGGAATACCTTCCTTATCTTGGATCTTAGCTTTG 3068 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||| | || |||| | |||||| || || || || | || || || || ||| Sbjct 3069 ACATTTTCAATGGTATCTGATGGTTCAACCTCAAGTGTGATGGTCTTTCCTGTGAGGGTT 3128 Query 27231 TTCACAAAGATTTGCATA 27248 ||||||||||| |||||| Sbjct 3129 TTCACAAAGATCTGCATA 3146 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 || ||||| | ||||| || || |||||||||||||| || |||| | ||||| Sbjct 2253 ACTAAATGGAGTGTAGATTCCTTCTGAATATTGTAGTCAGACAGAGTGCGACCATCTTCA 2312 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || || || | || || | ||| || || || || | ||| || || || Sbjct 2313 AGCTGCTTGCCTGCAAAGATCAGCCTCTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGA 2372 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| || | | || | ||||||| | || |||||||| || || | ||| Sbjct 2373 ATCTTTGCCTTTACATTCTCAATGGTGTCTGAAGGCTCCACTTCTAGGGTAATTGTTTTT 2432 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || |||||||| ||||||||| Sbjct 2433 CCTGTAAGGGTCTTCACAAAAATTTGCATA 2462 >seq2750648 Length=12224 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 27035 CAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTC 27094 ||| |||||||| | ||||| ||||||||||| || || || | || | || Sbjct 11035 CAAAACCAAATGAATTGTAGATTCTTTTTGAATGTTATAATCAGTAATACATTTATTATC 10976 Query 27095 TTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATC 27154 ||| | |||||||||||| |||| | ||||||||||| || || | ||| ||||| || Sbjct 10975 TTCTAATTGTTTACCGGCGAAAATTAATCGCTGTTGATCGGGAGGAATACCTTCTTTGTC 10916 Query 27155 GGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGA 27214 || || | ||| || |||||| || ||| | ||| ||||||| ||| || | Sbjct 10915 TTGTATTTTTTGTTTAAGTTTTTCTATTGTCTCTCCCGATTCTACTTCTATAGTAATTGT 10856 Query 27215 TTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || ||||| || || |||||||| Sbjct 10855 CTTACCAGTGAGTGTTTTTACGAATATTTGCAT 10823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410688770631744